Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq97228 127 1e-24 seq7954 123 2e-23 seq117227 109 4e-19 seq66478 107 1e-18 seq75922 95.1 9e-15 seq66268 82.4 5e-11 >seq97228 Length=228612 Score = 127 bits (140), Expect = 1e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||||||| |||||||| || | | || Sbjct 211783 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGG 211724 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || || ||||||| | |||||||| | ||| | ||||| Sbjct 211723 CCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCT 211664 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| ||||| | || ||| ||||| | ||| Sbjct 211663 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 211604 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||| | |||||||||||||| || ||||| Sbjct 211603 ATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566 >seq7954 Length=808569 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||||||| ||| |||| || | | || Sbjct 793859 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGG 793800 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || || ||||||| | |||||||| | ||| | |||||| Sbjct 793799 CCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCC 793740 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| |||||| || |||| ||||| | || ||| ||||| | ||| Sbjct 793739 TTATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTG 793680 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || || | ||||||||| || || | ||| Sbjct 793679 ATGGTTTTCCCTGTAAAGGTCTTCACAAAAATCTCCAT 793642 >seq117227 Length=121535 Score = 109 bits (120), Expect = 4e-19 Identities = 158/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCG 44178 ||||||||||| || ||||| ||| ||||||||| |||||||| || | | | | | Sbjct 79503 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAG 79444 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 | | || ||||||||||| | |||||||||| | ||||| ||| | ||| | ||||| Sbjct 79443 C-CATCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTC 79385 Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 ||| ||| ||||| ||| | || |||| ||||| | || ||| |||| | ||| Sbjct 79384 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGT 79325 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||| | |||| ||||||| || || || Sbjct 79324 GATGGT-TTTCCCTGTAAGGTCCTCACGAAAATCTGAAT 79287 >seq66478 Length=146994 Score = 107 bits (118), Expect = 1e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | || |||||||| || ||| ||| || ||||||||||| || Sbjct 11244 CATGCCACCTCTCAGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 11185 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || | ||||||||| || |||||||| | |||||||| || | Sbjct 11184 AGAAAGAGTGCAGCCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGG 11125 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | | || || ||| ||||| ||| | | | |||||||| || || Sbjct 11124 GGGGATGTCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 11065 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| | || || ||||| || || |||||||||| |||||||| ||| Sbjct 11064 CACCTCNAGGGTGATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCAT 11014 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||| |||| || ||| ||| || ||||||||||| || | || || | || ||| Sbjct 11450 ACCTGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCC 11391 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||| || | || | | || || || Sbjct 11390 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGG 11331 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| || ||||| |||| || || ||||| Sbjct 11330 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTG 11271 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || ||||||||||| ||||| |||||| Sbjct 11270 CCTGTCAGGGTCTTCACAAAGATCTGCATG 11241 >seq75922 Length=371470 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | |||||||| || ||| ||| || |||||||||||||| | Sbjct 193726 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 193785 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG----- 44225 || ||| | || ||||||||||| ||||||||||||| | ||| || || | Sbjct 193786 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGA 193845 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| ||| | | | |||| ||| || | Sbjct 193846 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGAGTCACTGGGCT 193905 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| |||| || || ||||| | || |||||||||| |||||| ||||| Sbjct 193906 CCACTTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTGCAT 193957 >seq66268 Length=907216 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 44148 CCTTT-TGGATGTTGTAATCGGCGAGT-TGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||| |||| |||||| || | || || ||| | || ||||||||||| || ||||| Sbjct 480587 CCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGC-CATCCTCCAGCTGCTTGCCAGCAAA 480529 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||| | |||||| || | | | |||||||| || ||||| ||| | | Sbjct 480528 TATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 480469 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| || || ||||| | || || ||||| ||||| ||||||||||| Sbjct 480468 CTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCAC 480409 Query 44326 GAAGATTTG 44334 |||||| || Sbjct 480408 GAAGATCTG 480400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359466664929141