Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 127 1e-24
seq7954 123 2e-23
seq117227 109 4e-19
seq66478 107 1e-18
seq75922 95.1 9e-15
seq66268 82.4 5e-11
>seq97228
Length=228612
Score = 127 bits (140), Expect = 1e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||||||| || ||||| ||| ||||||||| |||||||| || | | ||
Sbjct 211783 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGG 211724
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || ||||||||||| || || ||||||| | |||||||| | ||| | |||||
Sbjct 211723 CCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCT 211664
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| ||| | || |||| ||||| | || ||| ||||| | |||
Sbjct 211663 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 211604
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || ||| | |||||||||||||| || |||||
Sbjct 211603 ATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566
>seq7954
Length=808569
Score = 123 bits (136), Expect = 2e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||||||| || ||||| ||| ||||||||| ||| |||| || | | ||
Sbjct 793859 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGG 793800
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || ||||||||||| || || ||||||| | |||||||| | ||| | ||||||
Sbjct 793799 CCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCC 793740
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| |||||| || |||| ||||| | || ||| ||||| | |||
Sbjct 793739 TTATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTG 793680
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || || || | ||||||||| || || | |||
Sbjct 793679 ATGGTTTTCCCTGTAAAGGTCTTCACAAAAATCTCCAT 793642
>seq117227
Length=121535
Score = 109 bits (120), Expect = 4e-19
Identities = 158/219 (72%), Gaps = 3/219 (1%)
Strand=Plus/Minus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCG 44178
||||||||||| || ||||| ||| ||||||||| |||||||| || | | | | |
Sbjct 79503 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAG 79444
Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238
| | || ||||||||||| | |||||||||| | ||||| ||| | ||| | |||||
Sbjct 79443 C-CATCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTC 79385
Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298
||| ||| ||||| ||| | || |||| ||||| | || ||| |||| | |||
Sbjct 79384 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGT 79325
Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || |||||| | |||| ||||||| || || ||
Sbjct 79324 GATGGT-TTTCCCTGTAAGGTCCTCACGAAAATCTGAAT 79287
>seq66478
Length=146994
Score = 107 bits (118), Expect = 1e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || |||||||| | || |||||||| || ||| ||| || ||||||||||| ||
Sbjct 11244 CATGCCACCTCTCAGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 11185
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || || | || | ||||||||| || |||||||| | |||||||| || |
Sbjct 11184 AGAAAGAGTGCAGCCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGG 11125
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
|| | | || || ||| ||||| ||| | | | |||||||| || ||
Sbjct 11124 GGGGATGTCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 11065
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||| | || || ||||| || || |||||||||| |||||||| |||
Sbjct 11064 CACCTCNAGGGTGATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCAT 11014
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
||| |||| || ||| ||| || ||||||||||| || | || || | || |||
Sbjct 11450 ACCTGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCC 11391
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || |||||||| | |||||||| || | || | | || || ||
Sbjct 11390 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGG 11331
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | |||||||| || ||||| |||| || || |||||
Sbjct 11330 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTG 11271
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| || ||||||||||| ||||| ||||||
Sbjct 11270 CCTGTCAGGGTCTTCACAAAGATCTGCATG 11241
>seq75922
Length=371470
Score = 95.1 bits (104), Expect = 9e-15
Identities = 160/232 (69%), Gaps = 5/232 (2%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || ||||| | | |||||||| || ||| ||| || |||||||||||||| |
Sbjct 193726 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 193785
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG----- 44225
|| ||| | || ||||||||||| ||||||||||||| | ||| || || |
Sbjct 193786 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGA 193845
Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285
|| | || ||||| ||| ||||| ||| | | | |||| ||| || |
Sbjct 193846 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGAGTCACTGGGCT 193905
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| |||| || || ||||| | || |||||||||| |||||| |||||
Sbjct 193906 CCACTTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTGCAT 193957
>seq66268
Length=907216
Score = 82.4 bits (90), Expect = 5e-11
Identities = 134/189 (71%), Gaps = 3/189 (2%)
Strand=Plus/Minus
Query 44148 CCTTT-TGGATGTTGTAATCGGCGAGT-TGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
||||| |||| |||||| || | || || ||| | || ||||||||||| || |||||
Sbjct 480587 CCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGC-CATCCTCCAGCTGCTTGCCAGCAAA 480529
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
|||| | |||||| || | | | |||||||| || ||||| ||| | |
Sbjct 480528 TATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 480469
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||| || || ||||| | || || ||||| ||||| |||||||||||
Sbjct 480468 CTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCAC 480409
Query 44326 GAAGATTTG 44334
|||||| ||
Sbjct 480408 GAAGATCTG 480400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359466664929141
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |