Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq55139 149 9e-31
seq76021 116 5e-21
>seq55139
Length=370476
Score = 149 bits (164), Expect = 9e-31
Identities = 174/236 (74%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303
||||| | || |||||||| | ||| || ||| || ||||| || ||||| |||
Sbjct 200641 ATGAGCCTGGTCGTCTGGAATAACCTCTCATCGTCCCACTCAGGATGCTCCTGTTTAAGA 200582
Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363
|||||||| || ||||||||||||| |||||||| || || |||||||| || |||||
Sbjct 200581 ACATCGCANACTCTGTTGTGTTCCCGCAGCCAGATTGTAGCATACATCATCAGACCAGGC 200522
Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423
||||| ||||| |||| || || ||||| | || | || || || | || ||
Sbjct 200521 ACCAGACCAAAGACCTCCTGCCCCACAGCAAACCGTAGGTGCTCAGGGGTNTGAGGGGGG 200462
Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479
|||||||| | |||||| ||||||||| | ||||||||||| | || |||||
Sbjct 200461 TAGATCATTTCCACCTGAGTGTCTTTGACTGTGGGGGGATACACCTNTCCATCAAT 200406
Score = 138 bits (152), Expect = 2e-27
Identities = 202/286 (71%), Gaps = 0/286 (0%)
Strand=Plus/Minus
Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359
|| ||||| ||||| || || |||||| ||||||||||| | || | |||| ||||
Sbjct 202195 AAGGGACAACCCTTCACATTATTACAGATGAGAGACTGAATGGAAGCAGTGTTGATGATC 202136
Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419
|| || || ||||| || || ||||| ||||||||||| || || ||||||
Sbjct 202135 TTAAAACCTACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTATTGAGGAGAACAGATGGGA 202076
Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479
|| |||| || ||||| | |||||| || || || | || | ||| |||| || |||
Sbjct 202075 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 202016
Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539
|| || | ||||| ||||| ||||||| | | | |||||||||| || |||| |
Sbjct 202015 ATAGCATCTGGACGAGGCTTCTCCACCAGCAGGGCAGGATACAGCTCCATGGCGTCGATG 201956
Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
|| | ||| ||||| | || || || || ||||| |||||||
Sbjct 201955 TCACTGTAGAGGGCTTCCAACTCTGCGGCCATTTCCTTCTCTCCTG 201910
Score = 107 bits (118), Expect = 3e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| ||||||||| ||||| | || ||||| | ||| ||| | ||
Sbjct 199259 TCTTACCCCATGGCCCAGTCCTCGGGTGAACCCAGGTCCTCGTTTCTGATCTGTCTTGAA 199200
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
|||||| || ||||| || ||| |||| || |||||||| | || ||||| || |||||
Sbjct 199199 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGAGGATC 199140
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCT 9827
|| |||| || ||| |||||| ||||||| ||| | | | |||||| ||||
Sbjct 199139 AGGGATGAATTTCTTCCTTAGAAGAACCTTTTCCAGAACTTCTTTTGAATCCGGAAGCT 199081
Score = 86.0 bits (94), Expect = 9e-12
Identities = 181/265 (68%), Gaps = 4/265 (2%)
Strand=Plus/Minus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
||||| ||||| || || ||| | |||||||| || || | |||||| | |||||
Sbjct 201108 CTTACCCGGCCAGCGATCTGTCTGGTGAACGACTCAACAAACTGGGTGAGTCCGTGCTCA 201049
Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTT-TGTTTTATCAATCTC 9062
||||| ||||| |||||||||| ||| | | || |||| || | | || ||||
Sbjct 201048 ATGAGGATGGAGTTGTTGTAGAGGAACTGTTTGAAGCTGTACTCCTGGTCT-TCGATCTG 200990
Query 9063 AAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9122
||| | || |||| || | ||||||||||| | |||| || || | || ||
Sbjct 200989 AAACGTGTCAGGCAGCAGGGGGTGCCAGTGATAGAGTGTGTTGAATTCAGCTGCAATGCG 200930
Query 9123 ATTTTGGTACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAAT 9181
|| |||||||||||| | | ||| ||||| || || | ||| || | || |
Sbjct 200929 GTTCTGGTACTGGAACTGCTGGTTGAAA-AGCAGCTCTGGGTCGAACTTGAGTTTGAAGT 200871
Query 9182 GGTAGCCGCTGAGCTGCTGAACGTA 9206
|||| ||||| || ||||| |||||
Sbjct 200870 GGTAACCGCTCAGGTGCTGCACGTA 200846
>seq76021
Length=182335
Score = 116 bits (128), Expect = 5e-21
Identities = 160/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 8362 GAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTT 8421
||| ||||| || || || || |||||||||||||| ||| | || || || ||| ||
Sbjct 116480 GAAGCCCACATCACCCCCAAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATT 116421
Query 8422 CGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGAT 8481
||| ||| || |||||||| || |||||||| | ||| | || ||||| || |||||
Sbjct 116420 TCCCAGGAGACCCTTGAGGGAAAAGGGAGCCCCGATCTCTATCATACTCTCCCCAAAGAT 116361
Query 8482 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541
|| |||||| | |||||||| | | || | ||| | ||| | ||| || | |||
Sbjct 116360 GGAGTTGGGCTGACACTTTTCCAGAAGCAGCCCTGGGTAGAACTCTAAAGCATCAATGTC 116301
Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
||||| | || | || ||||| |||||||| |||||||
Sbjct 116300 ACCGTATAACTCCTCCAACTCAGCAGCCATCTCCTTCTCTCCTG 116257
Score = 91.5 bits (100), Expect = 2e-13
Identities = 118/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || |||| |||||| |||||||||||||| || || |||||| ||| || ||
Sbjct 108557 TCACCTATAAGGATGAGACGAGTGGTCTGGAAGAGCTGTTCGTCATCCCAGGTGGGGTGC 108498
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| | ||||| | |||||||| | |||||| || | | |||||| |||| | | |
Sbjct 108497 TCCTCCTTCAGCAAGTCGCACACGCGGTTGTGCTCTCGCACCCAGATCGTGGAGATGACC 108438
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394
|| ||||| || | || ||||| |||| || || |||||||
Sbjct 108437 ATCAGCCCTGGGAGCAACCCAAACACCTCCTGGCCCACAGCCA 108395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 715807103321920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |