Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq55139 149 9e-31 seq76021 116 5e-21 >seq55139 Length=370476 Score = 149 bits (164), Expect = 9e-31 Identities = 174/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| | || |||||||| | ||| || ||| || ||||| || ||||| ||| Sbjct 200641 ATGAGCCTGGTCGTCTGGAATAACCTCTCATCGTCCCACTCAGGATGCTCCTGTTTAAGA 200582 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 |||||||| || ||||||||||||| |||||||| || || |||||||| || ||||| Sbjct 200581 ACATCGCANACTCTGTTGTGTTCCCGCAGCCAGATTGTAGCATACATCATCAGACCAGGC 200522 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||| ||||| |||| || || ||||| | || | || || || | || || Sbjct 200521 ACCAGACCAAAGACCTCCTGCCCCACAGCAAACCGTAGGTGCTCAGGGGTNTGAGGGGGG 200462 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479 |||||||| | |||||| ||||||||| | ||||||||||| | || ||||| Sbjct 200461 TAGATCATTTCCACCTGAGTGTCTTTGACTGTGGGGGGATACACCTNTCCATCAAT 200406 Score = 138 bits (152), Expect = 2e-27 Identities = 202/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| || || |||||| ||||||||||| | || | |||| |||| Sbjct 202195 AAGGGACAACCCTTCACATTATTACAGATGAGAGACTGAATGGAAGCAGTGTTGATGATC 202136 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || || || ||||| || || ||||| ||||||||||| || || |||||| Sbjct 202135 TTAAAACCTACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTATTGAGGAGAACAGATGGGA 202076 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || || | || | ||| |||| || ||| Sbjct 202075 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 202016 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | ||||| ||||| ||||||| | | | |||||||||| || |||| | Sbjct 202015 ATAGCATCTGGACGAGGCTTCTCCACCAGCAGGGCAGGATACAGCTCCATGGCGTCGATG 201956 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | ||| ||||| | || || || || ||||| ||||||| Sbjct 201955 TCACTGTAGAGGGCTTCCAACTCTGCGGCCATTTCCTTCTCTCCTG 201910 Score = 107 bits (118), Expect = 3e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||| ||||| | || ||||| | ||| ||| | || Sbjct 199259 TCTTACCCCATGGCCCAGTCCTCGGGTGAACCCAGGTCCTCGTTTCTGATCTGTCTTGAA 199200 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| | || ||||| || ||||| Sbjct 199199 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGAGGATC 199140 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCT 9827 || |||| || ||| |||||| ||||||| ||| | | | |||||| |||| Sbjct 199139 AGGGATGAATTTCTTCCTTAGAAGAACCTTTTCCAGAACTTCTTTTGAATCCGGAAGCT 199081 Score = 86.0 bits (94), Expect = 9e-12 Identities = 181/265 (68%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| ||||| || || ||| | |||||||| || || | |||||| | ||||| Sbjct 201108 CTTACCCGGCCAGCGATCTGTCTGGTGAACGACTCAACAAACTGGGTGAGTCCGTGCTCA 201049 Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTT-TGTTTTATCAATCTC 9062 ||||| ||||| |||||||||| ||| | | || |||| || | | || |||| Sbjct 201048 ATGAGGATGGAGTTGTTGTAGAGGAACTGTTTGAAGCTGTACTCCTGGTCT-TCGATCTG 200990 Query 9063 AAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9122 ||| | || |||| || | ||||||||||| | |||| || || | || || Sbjct 200989 AAACGTGTCAGGCAGCAGGGGGTGCCAGTGATAGAGTGTGTTGAATTCAGCTGCAATGCG 200930 Query 9123 ATTTTGGTACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAAT 9181 || |||||||||||| | | ||| ||||| || || | ||| || | || | Sbjct 200929 GTTCTGGTACTGGAACTGCTGGTTGAAA-AGCAGCTCTGGGTCGAACTTGAGTTTGAAGT 200871 Query 9182 GGTAGCCGCTGAGCTGCTGAACGTA 9206 |||| ||||| || ||||| ||||| Sbjct 200870 GGTAACCGCTCAGGTGCTGCACGTA 200846 >seq76021 Length=182335 Score = 116 bits (128), Expect = 5e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 8362 GAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTT 8421 ||| ||||| || || || || |||||||||||||| ||| | || || || ||| || Sbjct 116480 GAAGCCCACATCACCCCCAAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATT 116421 Query 8422 CGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGAT 8481 ||| ||| || |||||||| || |||||||| | ||| | || ||||| || ||||| Sbjct 116420 TCCCAGGAGACCCTTGAGGGAAAAGGGAGCCCCGATCTCTATCATACTCTCCCCAAAGAT 116361 Query 8482 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || |||||| | |||||||| | | || | ||| | ||| | ||| || | ||| Sbjct 116360 GGAGTTGGGCTGACACTTTTCCAGAAGCAGCCCTGGGTAGAACTCTAAAGCATCAATGTC 116301 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||||| | || | || ||||| |||||||| ||||||| Sbjct 116300 ACCGTATAACTCCTCCAACTCAGCAGCCATCTCCTTCTCTCCTG 116257 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||||||||||||| || || |||||| ||| || || Sbjct 108557 TCACCTATAAGGATGAGACGAGTGGTCTGGAAGAGCTGTTCGTCATCCCAGGTGGGGTGC 108498 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | ||||| | |||||||| | |||||| || | | |||||| |||| | | | Sbjct 108497 TCCTCCTTCAGCAAGTCGCACACGCGGTTGTGCTCTCGCACCCAGATCGTGGAGATGACC 108438 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 || ||||| || | || ||||| |||| || || ||||||| Sbjct 108437 ATCAGCCCTGGGAGCAACCCAAACACCTCCTGGCCCACAGCCA 108395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715807103321920