Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq97228 158 3e-33 seq7963 100 7e-16 seq27123 89.7 1e-12 >seq97228 Length=228612 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || | || ||||| ||||| |||||||| ||| ||| ||| Sbjct 211569 CAGATTTTCGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGAC 211628 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| ||||||||||| ||||| || |||||| Sbjct 211629 ACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGATCAGCAA 211688 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || |||||||| || || ||||| |||||||| | ||| | | || || ||| | Sbjct 211689 AGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAACATT 211748 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| |||||||| Sbjct 211749 CAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 211783 >seq7963 Length=681008 Score = 100 bits (110), Expect = 7e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||| |||||| | || ||||| ||||| || || || ||||| ||||||||||| Sbjct 61045 CCATTGAGAACATGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAGCAGA 60986 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 | || ||||| ||| | || ||||| |||||||| | |||||| | ||||| ||| ||| Sbjct 60985 GGCTCATCTTTGCCNGCAAGCAGCTAGAAGATGGCCGCACTCTTTCTGATTACAACATCC 60926 Query 178105 AAAAAGAATCAACACTGCATCTTGT 178129 | ||||| || || ||| | || || Sbjct 60925 AGAAAGAGTCCACCCTGTACCTGGT 60901 >seq27123 Length=1658509 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/208 (71%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||| ||| || |||| || || ||||| || ||||||| |||||| Sbjct 191465 CAGATCTTGGTGACAACCCTGACAGACAAGACCATCAC--TCCAGGTGGA--GCTCAGCG 191410 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||| |||| | ||| ||||| || ||||||||||| ||||| || ||||||| Sbjct 191409 ACACCATCAAGAATGCCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCTGACCAGC 191350 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || | || | | | || |||| || ||||| || || | || || ||| Sbjct 191349 AGAGGCTGGTATTTGTCAG-CAAGAGCTGGAGGATGGCCATACCCTGTCTGACTACAACA 191291 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || |||| || || Sbjct 191290 TCCAGAAAGAGTCTACCTTGCACCTGGT 191263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201890133379362