Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 158 3e-33
seq7963 100 7e-16
seq27123 89.7 1e-12
>seq97228
Length=228612
Score = 158 bits (174), Expect = 3e-33
Identities = 164/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || | || ||||| ||||| |||||||| ||| ||| |||
Sbjct 211569 CAGATTTTCGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGAC 211628
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||| ||||| ||||||||||| ||||| || ||||||
Sbjct 211629 ACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGATCAGCAA 211688
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| || |||||||| || || ||||| |||||||| | ||| | | || || ||| |
Sbjct 211689 AGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAACATT 211748
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || || || |||||||| ||||||||
Sbjct 211749 CAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 211783
>seq7963
Length=681008
Score = 100 bits (110), Expect = 7e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044
|||| |||||| | || ||||| ||||| || || || ||||| |||||||||||
Sbjct 61045 CCATTGAGAACATGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAGCAGA 60986
Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104
| || ||||| ||| | || ||||| |||||||| | |||||| | ||||| ||| |||
Sbjct 60985 GGCTCATCTTTGCCNGCAAGCAGCTAGAAGATGGCCGCACTCTTTCTGATTACAACATCC 60926
Query 178105 AAAAAGAATCAACACTGCATCTTGT 178129
| ||||| || || ||| | || ||
Sbjct 60925 AGAAAGAGTCCACCCTGTACCTGGT 60901
>seq27123
Length=1658509
Score = 89.7 bits (98), Expect = 1e-12
Identities = 147/208 (71%), Gaps = 7/208 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || |||| ||| || |||| || || ||||| || ||||||| ||||||
Sbjct 191465 CAGATCTTGGTGACAACCCTGACAGACAAGACCATCAC--TCCAGGTGGA--GCTCAGCG 191410
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||||||| |||| | ||| ||||| || ||||||||||| ||||| || |||||||
Sbjct 191409 ACACCATCAAGAATGCCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCTGACCAGC 191350
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || | || | | | || |||| || ||||| || || | || || |||
Sbjct 191349 AGAGGCTGGTATTTGTCAG-CAAGAGCTGGAGGATGGCCATACCCTGTCTGACTACAACA 191291
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| ||||| || || |||| || ||
Sbjct 191290 TCCAGAAAGAGTCTACCTTGCACCTGGT 191263
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1201890133379362
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |