Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq75922 102 8e-17 seq66478 98.7 9e-16 seq66268 87.8 2e-12 seq7963 86.0 6e-12 >seq75922 Length=371470 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||| ||||| ||||| || || || || ||||| Sbjct 193735 AGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 193794 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG-----CGGGAACGC 41759 | || || |||||||||||||| || ||||| | ||||||||| | ||| | || Sbjct 193795 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGAGGGGGATGC 193854 Query 41760 TCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCA 41819 |||||| ||| ||| || ||| | | | | ||| || | |||||| |||| Sbjct 193855 CCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGAGTCACTGGGCTCCACTTCCA 193914 Query 41820 CCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 || || || || | ||||| ||||| | ||| |||||||| || || Sbjct 193915 GGGTGATGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTGCATTTTGTC 193963 >seq66478 Length=146994 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| || ||||| ||||| ||| ||| ||||| ||||| ||||| || || |||| Sbjct 11231 AGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAG 11172 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || | ||||||||||| || || || || ||||| ||||| | ||| | | ||| Sbjct 11171 CCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCT 11112 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||| | | | ||||| || | ||||||||| | || Sbjct 11111 TTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCNAGGGTG 11052 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| | ||| || | ||| || Sbjct 11051 ATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCATTTT 11011 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||| | ||||| ||| ||| ||||| ||||| ||||| || || |||| | || || Sbjct 11450 ACCTGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCC 11391 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || ||||| ||||| | ||| | | ||| || || | Sbjct 11390 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGG 11331 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||| |||| || || || || Sbjct 11330 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTG 11271 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| ||||| || || ||||||||| Sbjct 11270 CCTGTCAGGGTCTTCACAAAGATCTGCATG 11241 >seq66268 Length=907216 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||||||||| || | | ||||| | ||| ||||| || || |||| | || || Sbjct 480606 CACCAGATGCAAGATGGACCCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGCCATCCTC 480547 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||| || |||||||| | ||| || || | | | || |||||||| Sbjct 480546 CAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTTG 480487 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||| || ||| | | | ||||| || | ||| ||||| | || || || || Sbjct 480486 GATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 480427 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| ||||| ||||| ||||| |||| Sbjct 480426 GCCCGTCAGGGTCTTCACGAAGATCTGTGTGTT 480394 >seq7963 Length=681008 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| | ||| ||| ||| ||||| ||||| || || || || ||||| Sbjct 60892 AGACGGAGGACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 60951 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||| ||| || || || | ||| ||||||| ||| | || |||| Sbjct 60952 CCATCTTCTAGCTGCTTGCNGGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCC 61011 Query 41765 TTGTCCATGATTTTTTGCTTCA 41786 || ||| ||| || ||||| Sbjct 61012 TTATCCTGGATCTTGGCCTTCA 61033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461614167307600