Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq14 98.7 1e-15 >seq14 Length=40210847 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 17218 TTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTT 17277 ||||| |||| | || || || ||||| || |||||||||||||| || |||||||| Sbjct 6354266 TTCCTTGGGGTCCTTAATGTAAGTGTCGATAAGCAGGCTGTACATTTCTGAATGTATGTT 6354207 Query 17278 CTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 |||||||| || || || ||||| ||||| |||||||| | || |||||||| Sbjct 6354206 TTCCATGGCAATTTGGAAGCCGTAGAAGCAGCGGGCTTCGGTGATCTGAACTTC 6354153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517478183216280