Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 >seq6 Length=51880498 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| || || ||||| || | | || ||||| ||||| | ||||| || | ||| Sbjct 43802580 ATGGCCCTGCCCCCATGCCATGCTCTCTGCCAGTTCTACGTAGTGAACGGCGAGCTGTCC 43802639 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||||| | |||||||| ||||| || |||||||| || || || ||||||||||| | Sbjct 43802640 TGCCAGTTGTACCAGAGGTCGGGAGACATGGGCCTGGGCGTGCCCTTCAACATTGCCAGC 43802699 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || || || || |||||||| | |||||||| || ||||| || Sbjct 43802700 TACGCCCTGCTCACCTACATGATTGCGCATGTCACTGGACTGAA 43802743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399453260619945