Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq42 158 9e-34 seq20 114 9e-21 >seq42 Length=18384968 Score = 158 bits (174), Expect = 9e-34 Identities = 171/225 (76%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 26950 GAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATG 27009 |||| ||||| || ||||| || || || || | ||| ||||||||||| |||| || | Sbjct 17784738 GAACCATGGGGGTGACGCAGGTACATCCAACGGCCACCAGCATCTTCTCCAGCCGGAAGG 17784679 Query 27010 AATTAGGGCAGGGTTG--ATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGAC 27067 | || |||||| | || | ||||| || | || || |||||||||||||| |||| Sbjct 17784678 AGTTGGGGCAGTGCTGGGACTCCCTT--CGTAGGACCAGGATCTCTTGTTGGATGAGGAC 17784621 Query 27068 TGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTT 27127 ||||||||||| || || ||||| |||||||| ||||| || |||| ||| ||| | Sbjct 17784620 AGAGTTCATGTGTGGGTTCACCTTCCCTTCAGCATTGACACAGCCCAAGTGGCGGCACCT 17784561 Query 27128 TGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||||| ||||||||||| ||||| || |||| || ||||| Sbjct 17784560 GGCCTCCCAGATCACAGAGGGGTATCTCTCAGGATCCTCGTTGCG 17784516 >seq20 Length=31296900 Score = 114 bits (126), Expect = 9e-21 Identities = 316/485 (65%), Gaps = 32/485 (7%) Strand=Plus/Minus Query 3969 TTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACT-TTTCTCTTCTTGCACAT 4027 ||||| |||||| |||| |||| ||| ||||| || || | ||| || || || | || Sbjct 23157287 TTAATCATTCTTTTCATGCACTTTAAACTTGTATTTGATGCCCTTTTTCCTCCTGGATAT 23157228 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 | |||||||| ||| |||||| | ||| || ||||| | ||||| |||||| | Sbjct 23157227 CATAAAGAACATTTGAGTATTCTGGGATGCATTTATACTTCTCCAAATCAATTTCTGGGA 23157168 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 || | |||| || ||| ||| || |||||| |||||||| | || |||| || || Sbjct 23157167 TAATTGCATCACTTTTAAATACTTTCACGATCCTGGTCACAAATACATTGAGATGGCCTG 23157108 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | | | || ||||||||||| | ||| || || | |||| || || | Sbjct 23157107 GCTGATTAATGGCTTCTTTATAAATAGAGCT---GCCCACTATCTGAACTGTGCC----- 23157056 Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAA 4267 |||||| ||||||||| || || | ||| || || |||| ||| ||| || | Sbjct 23157055 TATTTGTTAATTCTGGTCCCTCAGTTACTTTGAAGGCCTCATTCAAA--CTTGGC----A 23157002 Query 4268 AATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTT 4327 ||| |||| |||| | ||||||| |||| ||||| | | Sbjct 23157001 AAT-----------------TCCTGGAGTTTTCTCCTGAGAAATGCATTGATTCTCTCCT 23156959 Query 4328 TTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAAT 4387 ||||| | | ||||| ||| || |||| |||||| ||| ||||| ||| | | Sbjct 23156958 GTAAAGATCAATCCTTCTTGAGAACAGATAACCCAGTCTTCCTACGCATAACCACCAGGT 23156899 Query 4388 TCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCA 4447 | | | | || | |||||| || || | ||||||||||| | || || ||||| Sbjct 23156898 TTTCTCTGCCTTCTGTAGAAGAGGTTGTGGATATTCTTTGGAAGTACTTGAATGCATTCC 23156839 Query 4448 TAAGT 4452 | ||| Sbjct 23156838 TGAGT 23156834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361205318952671