Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq67 98.7 9e-16 seq65 89.7 4e-13 seq6 87.8 2e-12 >seq67 Length=9509266 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || | |||||||| ||||| ||| ||| || ||| | Sbjct 6398156 ATGCAGATCTTTGTCAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTTGAGCCCTCG 6398215 Query 29022 GAGACGGTGGCCGATCT-TAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||||| |||| | ||||| ||||| | || |||||| Sbjct 6398216 GATACAATAGAAAATGTATAAGCCAAAA-TCCAGGATAAGGAAGGAATTCCTCCAGATCA 6398274 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||||||| |||||||| ||||| || ||||||||| | || | | | |||||||| Sbjct 6398275 GCAAAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAAGTTTATCTGATTACAA 6398334 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||| | ||||| ||| ||||| Sbjct 6398335 CATTCAGAAGGAGTGCACTCTGCACCTGGTG 6398365 >seq65 Length=10584338 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || | ||||| |||||||| |||||||| ||||| || |||||| Sbjct 10480873 GATAAGGAAGGAATTCCTCTGGATCAGCAAAGACTGATCTTTGCTGGCAAGCAGCTGGAA 10480932 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 || | |||| | | || ||||| ||||||||||| |||||||| || ||||| Sbjct 10480933 TATGGCCGAACTTTATCGGACTACAACATTCAGAAGGAGTCTACTCTGCATCTGGTG 10480989 >seq6 Length=51880498 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || | |||||||| ||||| ||| || || ||| | Sbjct 32416181 ATGCAGATCTTCGTAAAGACCCTTACGGGCAAGACCATCACCCTAGAGGAAGAGCCCTCG 32416240 Query 29022 GAGACGGTGGCCGATCTTAA-GCAAAAAATTGCC--GATAAAGAAGGTGTGCCCGTAGAT 29078 || ||| | | || | || || |||| || ||||| ||||| | || ||| Sbjct 32416241 GATACGATAGAAAATGTAAAAGCCAAAAC---CCAGGATAAGGAAGGAATTCCTCCGGAT 32416297 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||| | |||||||| ||||| || ||||||||| | ||||| | || ||| Sbjct 32416298 CAGCAAAGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCAAACTTCATCTGACTAC 32416357 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 || ||||||||||| || ||||| ||| ||||| Sbjct 32416358 AACATTCAGAAGGAGTCCACTCTGCACCTGGTG 32416390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428281598784755