Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq11 277 2e-69 seq8 98.7 1e-15 seq19 82.4 9e-11 >seq11 Length=41765191 Score = 277 bits (306), Expect = 2e-69 Identities = 264/338 (78%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||| ||||| | | | | ||| | | ||| |||||||||| ||| Sbjct 17424662 AGCAGGGCTGTGATGTCAGGCTCAATGTCGATGGTGGGAAACCGGCGGCTGTACCTACGC 17424721 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || |||||| | ||||| | ||||||||| |||||||||||||| ||||||||| Sbjct 17424722 ACCGGGACGCCGTCGGGGCCCACGAGGAACTTCTCAAAGTTCCAGGCCACATCGTTGCGG 17424781 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||||| |||| || ||||||| ||| ||||| | | ||||||||| Sbjct 17424782 CACACCGGGGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGCGGTAGGGTCGTCGCTG 17424841 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| || |||||||| || |||||||| ||||| ||||||||| | || || || ||| Sbjct 17424842 GGCGCAGGAAGGGCCTCCCGCAGGAAGGCAAAGAGTGGATGTGCCTTGGCGCCATTCACC 17424901 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||| |||||||| ||||| |||||||| ||| || || ||||| | ||| Sbjct 17424902 TCGCACTTCTCAAAGAGCATGAAGTTGGGCTCGAACCCGCCTCCCGGTCGGACATACTTG 17424961 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 || ||| || |||||| | |||| ||| || ||||| Sbjct 17424962 AGCGAATTCAGGATCTCTTCGTTCTTGGCATTCTCCTG 17424999 Score = 174 bits (192), Expect = 2e-38 Identities = 190/250 (76%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | ||| |||| Sbjct 17425237 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGGGGTCCGAGGC 17425296 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || ||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| | Sbjct 17425297 GCTCTTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTAGTGCCTCAGAGCGACGCCA 17425356 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| || |||| ||| ||| || | | | || | | ||| || || || |||| Sbjct 17425357 CATTCTCAATCAGCAGCACCTTGCCGCGCAGGGAACCCAGGTTCAGGGGCTCCCCGCCGG 17425416 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCG 83630 | || || ||||||||||||||||| || |||| | ||||| || | ||| |||| Sbjct 17425417 CCAGTGGCCGCGCTGAGAAGGCGTACACCGA-CTGG--GCAGCCGCCGCCATCTGAGCCG 17425473 Query 83631 CGTACTTGGC 83640 | || |||| Sbjct 17425474 CACACATGGC 17425483 >seq8 Length=54109746 Score = 98.7 bits (108), Expect = 1e-15 Identities = 173/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 50449 CAACTTCGCTGTGCGTATGCTCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCT 50508 ||||||||| || |||| ||| || |||| || || ||||| || |||||||| Sbjct 9351410 CAACTTCGCCTCCCGCCTGCTGGTGCACCTGTTCCCTGAACTCTTCACCCACGAGAACCT 9351469 Query 50509 GCACACGCACTTCAACTGCTACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCC 50567 || || ||| | ||||||| |||||| |||| ||| |||| || || || ||| Sbjct 9351470 GCGCAAGCAGTACAACTGCAGCGGCTCGCTGGGTAAGAAGCAG-CTGGATCCATCGCGCA 9351528 Query 50568 TGCGCTTGCTCCGGCACTATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGT 50627 | || |||| || |||||||||||||| |||| ||| ||||| || || | Sbjct 9351529 TCAAGCTGATCCGCCATTATGTGCAGTTGCTCTACCCCAGGGCAAAGAACGACCGTGTCT 9351588 Query 50628 GGATCACAAAGTTCCTGGCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CA 50686 ||| | |||| ||| ||||||||||||||||||||||| | |||||| || Sbjct 9351589 GGACCCTGGAGTTTGTGGGCAAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCA 9351646 Query 50687 CAGGCGC 50693 |||||| Sbjct 9351647 GAGGCGC 9351653 >seq19 Length=29527457 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/151 (72%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| || ||||| || ||||| ||||| | || | | || Sbjct 27058799 CCTGATGTCCAAACTGGTTGCAAGGGAAGCCGAGCACCACCAGGCGCCTGGGG---AAGC 27058743 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | ||||||||||| | ||| ||| | |||||| ||| | |||||||| || || | Sbjct 27058742 GGCATTGCAGCTCGTTGAGCTGGGTGAAGTCCCGGCTGGTGGTGCCTCAGAGAGAGGCCA 27058683 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 ||||||| || |||| ||| ||| || || Sbjct 27058682 CGTTCTCAATTAGCACCGCCCTGCCTCGGAA 27058652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608717496606840