Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq42 147 2e-30 seq67 104 2e-17 seq65 96.9 3e-15 seq6 95.1 1e-14 >seq42 Length=18384968 Score = 147 bits (162), Expect = 2e-30 Identities = 163/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| || |||||||| ||| || |||||| |||||| Sbjct 13800108 CACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCCTC 13800049 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTG 118647 ||||| || | || |||||||||||||||| || || || ||||||||||||| ||| Sbjct 13800048 CAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 13799989 Query 118648 TAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 | | || || || || | ||||| |||||| || ||| ||||||| ||| | || Sbjct 13799988 GA--TCTTGGTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTC 13799931 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||||| ||||| || ||||| || |||||||||| Sbjct 13799930 TTGCCCGTCAGGGTCTTTACGAAGATCTGCATGG 13799897 >seq67 Length=9509266 Score = 104 bits (114), Expect = 2e-17 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||| ||||| ||| | || |||| || |||||||||||||| | | | || Sbjct 6398371 TCTCAGCACCAGGTGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGATAAACTTCGGCC 6398312 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || ||||| || ||||| |||| || | |||||||| ||||| || || ||||| Sbjct 6398311 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCTGGAGGAATTCCTTCCTT 6398252 Query 118643 GT-CTGTAATTTTTTGTTTA-ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTC 118700 | ||| | |||| | ||| || | ||| | || |||| | ||| ||||||| ||| Sbjct 6398251 ATCCTGGA--TTTTGGCTTATACATTTTCTATTGTATCCGAGGGCTCAACCTCGAGGGTG 6398194 Query 118701 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || ||||| || || || || ||||| |||||||| Sbjct 6398193 ATGGTCTTGCCCGTAAGGGTCTTGACAAAGATCTGCAT 6398156 >seq65 Length=10584338 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||| ||||| || | |||||||| || ||||||||||| || Sbjct 10481007 ACCACCACGGAGTCTCAGCACCAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 10480948 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| || || || ||||| || ||||| |||| || | |||||||| |||| Sbjct 10480947 TAAAGTTCGGCCATATTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCCAGAGG 10480888 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || | ||| ||| || | ||| | || |||| | ||| || Sbjct 10480887 AATTCCTTCCTTATCCTGGACTTTGGCTTTTACGTTTTCTATCGTATCCGAGGGCTCAAC 10480828 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | || ||||| || || || || ||||| | |||||| Sbjct 10480827 CTCGAGGGTGATGGTCTTGCCTGTAAGGGTCTTGACAAAGACCTGCAT 10480780 >seq6 Length=51880498 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || || ||||| ||| || Sbjct 47505267 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 47505208 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || | |||||| || ||||| ||||| ||||| ||| | Sbjct 47505207 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTACCTGGA 47505148 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 | || || || | |||| |||||| || || ||||| | ||| | || ||| Sbjct 47505147 -TCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTG 47505089 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 47505088 CCGGTCAGGGTCTTCACGAAGATCTGCAT 47505060 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GC 118569 ||| || || | ||||| ||||| ||| | || ||||| || ||||||||||| || | Sbjct 32416408 ACCACCACGGAGTCTCAGCACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA 32416349 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | | ||| | ||| || ||||| || ||||| |||| | | |||||||| |||| Sbjct 32416348 TGA-AGTTTGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAG 32416290 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| || |||| ||| || | ||| | || |||| | ||| Sbjct 32416289 GAATTCCTTCCTTATCCTGGGTTTTGGCTTTTACATTTTCTATCGTATCCGAGGGCTCTT 32416230 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || ||||| || || || ||||| || |||||||| Sbjct 32416229 CCTCTAGGGTGATGGTCTTGCCCGTAAGGGTCTTTACGAAGATCTGCAT 32416181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433775300963332