Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq8 104 4e-17 >seq8 Length=54109746 Score = 104 bits (114), Expect = 4e-17 Identities = 105/133 (79%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||| ||||| ||| | |||||||| || ||||| ||||||||| | |||||||| Sbjct 34333158 GCGTTTTTCGGAGCCCAGATGAATTCTTTCATTCATGTGATTATGTACTCGTATTATGGG 34333217 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 || | || | ||| || ||| ||||||| |||||| |||||||||||||| || || | Sbjct 34333218 TTGACTGCATTTGGCCC-ATGGATTCAGAA-GTATCTTTGGTGGAAACGTTACCTGACAA 34333275 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 34333276 TGTTGCAGCTGGT 34333288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923076542076840