Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq76 114 8e-21 seq42 113 3e-20 seq6 111 1e-19 seq49 105 4e-18 seq40 105 4e-18 seq24 98.7 6e-16 seq17 98.7 6e-16 seq3 93.3 3e-14 seq67 91.5 1e-13 seq65 86.0 4e-12 seq58 84.2 1e-11 >seq76 Length=7797616 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | || || ||||| ||||||||||| ||||| ||| |||| Sbjct 4980824 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTC 4980883 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||||||||| || || |||| |||||||||| || | || ||||| || Sbjct 4980884 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATC 4980943 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | ||| | | || || |||| |||||||| Sbjct 4980944 CTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 4981003 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||| ||||||||||| Sbjct 4981004 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4981036 >seq42 Length=18384968 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||||||| | || |||||||| ||||||||||||||| Sbjct 13800125 CCACCCCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGAC 13800066 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||||| || || ||||| ||||||||||| ||| Sbjct 13800065 AGAGTGCGACCATCCTCCAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGG 13800006 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | || | ||| | | || || Sbjct 13800005 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCACC 13799946 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || || || ||||||||||| Sbjct 13799945 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 13799899 >seq6 Length=51880498 Score = 111 bits (122), Expect = 1e-19 Identities = 153/213 (72%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| ||||| ||| | || Sbjct 47505270 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 47505211 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||||||| || || |||| ||||||||| || | || ||||| | Sbjct 47505210 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTACCT 47505151 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 | ||||| ||| | || | || | ||| | | ||| || |||| |||||||| Sbjct 47505150 G-GATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTC 47505092 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||||| || || ||||| |||||||||||| Sbjct 47505091 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATC 47505059 >seq49 Length=14824766 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| ||||| || |||| |||| |||||||||||| || Sbjct 11086286 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCTGCAAAG 11086227 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| |||||||||| || | || || || || ||||| ||| | || Sbjct 11086226 ATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTGACATTT 11086167 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | ||| || |||| |||||||| ||||| || || || ||||| Sbjct 11086166 TCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 11086107 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 11086106 AAGATCTGCAT 11086096 >seq40 Length=19049039 Score = 105 bits (116), Expect = 4e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| ||||| |||| ||| Sbjct 15841330 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGTTGTCT 15841271 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||||||| || || |||| |||||||||| || | || ||||| || Sbjct 15841270 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCC 15841211 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | ||| | | ||||| |||| |||||||| Sbjct 15841210 TGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 15841151 Query 34358 TTGCCGGTGAGAGTTTTCACAAA 34380 |||||||| || || || ||||| Sbjct 15841150 TTGCCGGTTAGGGTCTTGACAAA 15841128 >seq24 Length=26830293 Score = 98.7 bits (108), Expect = 6e-16 Identities = 154/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 34171 CAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACG 34230 ||| | ||| |||||||| | || || ||||| ||||||||||| ||||| | Sbjct 11934361 CAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGTG 11934302 Query 34231 GTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTC 34290 | | || |||| |||||||||||| || || |||| |||||| ||| || | || || Sbjct 11934301 GCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGTTCGGGAGGGATGCCTTC 11934242 Query 34291 CTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGT 34350 ||| || ||||| ||| | || | || | || | | || || |||| || Sbjct 11934241 CTTATCCTGGATCTTGGCCTTGACATTCTCGAT-GTTTCATTGGGCTCCACCTCCAGGGT 11934183 Query 34351 GATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||| ||||| || || || ||||||||||||||||| Sbjct 11934182 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 11934144 >seq17 Length=35549867 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || || || ||||||||||| ||||| ||| | || Sbjct 30593103 AGGACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 30593044 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||||||| || || |||| || ||||||| || | || ||||| || Sbjct 30593043 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTTCTGGTCGGGAGGGATGCCTTCCTTATCC 30592984 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | ||| | || || |||| |||||||| Sbjct 30592983 TGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGTGCTCAACCTCCAGGGTGATGGTC 30592924 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||| || || ||||||||||||||||| Sbjct 30592923 TTGCTGGTCAGGGTCTTCACAAAGATCTGCAT 30592892 >seq3 Length=63406555 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||| | ||||| ||||| ||| ||| |||| ||||||| || Sbjct 63015619 TCTTTCTGGATGTTGTAGACAGACAGGGTACGGTTGTCTCCCAGCTGCCTGCCTGCAAAG 63015678 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | || ||||||||| || | || ||||| || ||||| ||| | || Sbjct 63015679 ATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTCGCCTTGACATTC 63015738 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 |||| | ||| | | | ||| ||| ||| |||| |||||||| | || ||||| Sbjct 63015739 TCTATGGTGTCGCTGGGCTTGACCTCCGGGGTGGTGGTCTTGCCGGTCAAGGTCTTCACG 63015798 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 63015799 AAGATCTGCAT 63015809 >seq67 Length=9509266 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 34171 CAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACG 34230 ||| |||||||||||||| | ||| | || ||||| |||||||| || || | || Sbjct 6398374 CAGTCTCAGCACCAGGTGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGATAAACTTCG 6398315 Query 34231 GTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTC 34290 | | || |||| ||||||||| || || || || | ||||| || || | | || Sbjct 6398314 GCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCTGGAGGAATTCCTTC 6398255 Query 34291 CTTGTCGGCTATCTTTTGCTT-TAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCG 34349 ||| || || ||| |||| || || |||| | ||| | | || || || | | Sbjct 6398254 CTTATCCTGGAT-TTTGGCTTATACATTTTCTATTGTATCCGAGGGCTCAACCTCGAGGG 6398196 Query 34350 TGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 ||||||| ||||| || || || || |||||||||||||||| Sbjct 6398195 TGATGGTCTTGCCCGTAAGGGTCTTGACAAAGATCTGCATCG 6398154 >seq65 Length=10584338 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || ||||||||||| || | |||| || ||||| ||||||||||| || Sbjct 10481006 CCACCACGGAGTCTCAGCACCAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAT 10480947 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | | |||| ||||||||| || || || || | ||||| || | || Sbjct 10480946 AAAGTTCGGCCATATTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCCAGAGGA 10480887 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || | |||| || |||| | |||||| ||| | | || || Sbjct 10480886 ATTCCTTCCTTATCCTGGA-CTTTGGCTTTTACGTTTTCTATCGTATCCGAGGGCTCAAC 10480828 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||| || || || || ||||||| ||||||| Sbjct 10480827 CTCGAGGGTGATGGTCTTGCCTGTAAGGGTCTTGACAAAGACCTGCATC 10480779 >seq58 Length=12492363 Score = 84.2 bits (92), Expect = 1e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 34166 CCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGC 34225 |||||||| | ||| |||||||| || || || ||||| ||||||||||| ||||| Sbjct 9398031 CCGCGCAGGCGCAGGACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGG 9398090 Query 34226 TGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276 ||| | || |||| | ||||||||| || || |||| |||||||||| Sbjct 9398091 GTGCGGCCATCTTCCAGTTCCTTGCCTGCAAAGATCAGCCTCTGCTGGTCG 9398141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323030967937760