Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 4e-14 >seq9 Length=49469770 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||||| | || ||||||||| | | | || |||||||| | Sbjct 15771954 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTGGTTTCTGCCATAACTGCAAAAC 15772013 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 || || || ||| | || ||||||||||| ||||| |||||||| ||||| |||| Sbjct 15772014 GCTGGTACTCTGAAACCCGTTTCTCAAAGAAATTCGTTTTGCCTTCTAAAGAAATGTTTT 15772073 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 |||| |||||||| ||||||| || Sbjct 15772074 CCATGAAATCAAAGGGATTTTCTG 15772097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462451752030600