Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq3 1375 0.0 seq50 109 4e-19 seq84 86.0 4e-12 >seq3 Length=63406555 Score = 1375 bits (1524), Expect = 0.0 Identities = 1258/1578 (80%), Gaps = 19/1578 (1%) Strand=Plus/Minus Query 107143 TAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCT 107202 |||||||| || |||| | ||| |||| | || | | || || | | || ||| | | Sbjct 38816628 TAGGCAGGGTTTTACTGCAGGTATCTGTCCAGAGGATAAATATACATATGCCTTCAATTT 38816569 Query 107203 GGAGTTGAACTTGATGTTCT--GGATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAA 107260 |||||| ||| | |||||| ||| | |||| |||| | ||||||||||||||||| || Sbjct 38816568 GGAGTTAAACCTCATGTTCCTAGGACT-GTTTATAATCAGAGGCATTTTGTTCTGTCAAA 38816510 Query 107261 GGATCTC---CTCCTCCACCTTGCCTGTGCCCAAACTCTCCTGATCTCCCATCCCATGAA 107317 || | | ||||||| |||| ||| || |||||||| || |||||||||||||||| Sbjct 38816509 GGGTTCCAACCTCCTCCTCCTTCCCTCTGTCCAAACTCCACTACTCTCCCATCCCATGAA 38816450 Query 107318 GATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTA 107377 |||| | ||||||||| || ||||| | ||| ||||||| |||||| ||||| Sbjct 38816449 GATGATTCAGTGGAAGAAA---CTCTGCCGTCGGTGTCACCTGTGGGTCCTGGGGTGCTA 38816393 Query 107378 TATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTC 107437 | ||||| ||||| | || || || ||| | || ||||| | | ||||| | || Sbjct 38816392 TTTGCTGTTGGCCATCGTCTCACTCAGATTCTCTCTCAGATGGAGCTGTGACTTTGAGCA 38816333 Query 107438 CTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAG 107497 | |||| ||||| |||| || || | || | | ||||||||||||| ||||||| Sbjct 38816332 CCTGGACCTGGACTCCAAGGCTTTTCGAAGCCGGTACTGTAGGGACATCTTGTACAGGTC 38816273 Query 107498 CCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGA 107557 |||||||||||||||||| | ||||||||||||| |||||||| || ||||||||||| Sbjct 38816272 CCTGAAGCTGCCAGCAAAAGGCACCATCAACTGTTCGGGGATCACCCGCGGGGACCAGGA 38816213 Query 107558 AGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCAC 107617 |||||| |||| || |||| | || ||||| || |||||||||||| |||||||| Sbjct 38816212 GGCAGTGATCCAAGCTGTCCTGAATAATCTGGAGGTCAAGAAAAAGCGGGAACCTCTCAC 38816153 Query 107618 ---TGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAA 107674 || ||| | |||||| | | ||||||||||| ||||||||||||| | ||||| Sbjct 38816152 ACCTG--ACC-ACTACCTCGAACTGACCAGAGACTGCGAGCGCTTCAAGGAGGAGAGGAA 38816096 Query 107675 GTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 |||||| |||||||||||||| ||||| ||| | || ||||| || |||||||| ||||| Sbjct 38816095 GTTCATCCAGTTCCCACTGAGCAAAGAGGAGTTGGAATTCCCAATCGCCTACTCTATGGT 38816036 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 ||| ||||||||||||||||||||||| || |||||||||| |||||||||||||||| Sbjct 38816035 GGTTCATGAGAAGATTGAAAACTTTGAGAGGTTGCTGCGAGCTCTGTATGCCCCTCAGAA 38815976 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGC 107854 ||||||||||||||| |||||| || |||||||| | ||||||| | || || |||| Sbjct 38815975 CATATACTGTGTCCATGTGGATACCAAATCCCCAGAAAGTTTCAAAAAAGCTGTGGAGGC 38815916 Query 107855 CATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGC 107914 ||||| ||| |||||||||||||||||||| || |||||| |||| | || |||||||| Sbjct 38815915 CATTACTTCATGCTTCCCCAATGTCTTCATAGCAAGTAAGCTGGTGTCTGTAGTTTATGC 38815856 Query 107915 CTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGT 107974 |||||||| | | || || |||||||||||||| |||||||||||||| |||||| | || Sbjct 38815855 CTCCTGGTTCCGGGTACAGGCTGACCTGAACTGCATGGAAGACTTGCTACAGAGCCCGGT 38815796 Query 107975 GCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGA 108034 ||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| Sbjct 38815795 GCCATGGAAATACTTTCTGAACACATGCGGTACAGACTTCCCTATAAAGACCAACGCCGA 38815736 Query 108035 GATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTC 108094 ||||||| |||| |||| ||||||| || || || ||||||||| | ||||| ||| | Sbjct 38815735 AATGGTCCAGGCCTTCAAACTGTTGAATGGGAAAAATAGTATGGAGACAGAGGTGCCTAC 38815676 Query 108095 TGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTAC 108154 ||| ||||| | ||||||||||| | |||||| |||| ||||||| ||||| || Sbjct 38815675 TGAAGGCAAAAGGCACCGCTGGAAATATCACTATGAAGTGAAAGACACATTGTACGTAAC 38815616 Query 108155 CAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTT 108214 || || || ||| |||||||| ||| ||||| || | |||||||| || ||||||||||| Sbjct 38815615 CAACAGGAAGAAAGACCCTCCGCCTTATAATATAACTATGTTCACGGGAAATGCCTATTT 38815556 Query 108215 TGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGT 108274 |||||| ||| ||| ||| | |||||||| || | ||||| ||||| ||| |||| | Sbjct 38815555 TGTGGCTTCTAGAGACTTCATAAAACATGTCATAAAGAACCCCAAATCTCAAGAACTGAT 38815496 Query 108275 TGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGC 108334 ||| ||||||||||| ||||| ||||| ||||||||||||||||| || || |||||||| Sbjct 38815495 TGAGTGGGTCAAAGATACCTACAGCCCAGACGAACACCTCTGGGCAACGCTGCAGCGTGC 38815436 Query 108335 TCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGC 108394 || ||||||||||||| ||| | |||| ||||||| ||||||||||||||||| | Sbjct 38815435 ACCATGGATGCCTGGCTTCACCCCTTGGCACCGCAAGTATGACATCTCAGACATGACTTC 38815376 Query 108395 CATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTA 108454 ||| ||||| || |||||||||||| |||||||||||||||||| | |||||||||||| Sbjct 38815375 CATTGCCAGACTTGTCAAGTGGCAGGACCACGAGGGAGATGTCAAGAAGGGGGCGCCTTA 38815316 Query 108455 TGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTA 108514 |||||| ||||||||| |||||| | |||| |||| ||||| ||||| ||||||||| | Sbjct 38815315 TGCACCTTGCTCTGGAGTCCATCAGCGGGCTGTCTGTATTTATGGGGCTGGGGACCTGCA 38815256 Query 108515 CTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAA 108574 |||| | | |||||||||||||| ||||| ||||| |||||||| | ||||||||| || Sbjct 38815255 CTGGCTATTGCAGAACCATCACCTGTTGGCCAACAAATTTGACCCAAAGGTGGATGACAA 38815196 Query 108575 CGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTG 108634 ||| || |||||||||||||||||||| ||||||||||||||||||| ||||||||| || Sbjct 38815195 CGTTCTTCAGTGCTTAGAAGAGTACCTCCGTCATAAGGCCATCTATGAGACTGAACTCTG 38815136 Query 108635 AGCTGCACTGTGGGCCAGGGACTGTGCCAACAT-GCCCAGGGCGTACTGGTACTGTGTGG 108693 || ||| |||| ||||| | || | | || | |||| | | |||| | | ||| Sbjct 38815135 AGACACACGGTGG--TAGGGA-TATGTCTAAATGGGCCAGCACTTGCTGGGAACATTTGG 38815079 Query 108694 GGTGGGGGACGAGGGCTG 108711 |||||| || ||||||| Sbjct 38815078 GGTGGGAGAGTAGGGCTG 38815061 >seq50 Length=14117412 Score = 109 bits (120), Expect = 4e-19 Identities = 226/331 (68%), Gaps = 8/331 (2%) Strand=Plus/Plus Query 108288 GACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA-TGCC 108346 |||||||| ||||| ||||| | |||||||||||| | || | | ||| | | |||| Sbjct 4068804 GACACCTACAGCCCGGACGAGTATCTCTGGGCCACCATCCAAAG-GATCCCAGAAGTGCC 4068862 Query 108347 TGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 |||||||| || | || || ||||| || | || |||||| || |||| || Sbjct 4068863 AGGCTCTGTATCGTTAAGTCAG---AAGTACGACTTGTCTGACATGCAGGCGGTCGCGAG 4068919 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTG 108463 | | ||||||||||||||| || || || || || ||| ||||| || ||||||| Sbjct 4068920 GTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTGTCCAAGGGCGCGCCCTACCCACCCTG 4068979 Query 108464 CTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCT 108523 | || |||| | | | | ||| | | |||||| || ||| || | ||||| || Sbjct 4068980 CCACGGTGTCCACGTGCGCTCTGTGTGCGTGTTCGGGGCTGGCGACTTGAATTGGATGCT 4069039 Query 108524 CCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCA 108583 | ||| || ||| | || || |||||||||||| || || || | | | || Sbjct 4069040 GCGGAAACACCACTTGTTTGCCAACAAGTTTGACACGGATGTTGACCTCTTTGCCATCCA 4069099 Query 108584 GTGCTTAGAAGAGTACCTACGTCATAAGGCC 108614 |||| | || ||| |||| || ||||| ||| Sbjct 4069100 GTGCCTGGATGAGCACCTGCGGCATAAAGCC 4069130 Score = 105 bits (116), Expect = 5e-18 Identities = 258/388 (66%), Gaps = 6/388 (2%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || ||||| ||| ||| || ||||| || || || | || || ||| | || Sbjct 4068201 CCGCTTAGCAAAGAGGAGGCAGAGTTTCCCATCGCTTATTCCGTCGTCGTTCATCACAAA 4068260 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || |||| | || |||| ||| | ||| | || ||||||||| | ||||| | Sbjct 4068261 ATCGAAATGCTGGACAGGCTCCTGAGGGCCATCTACATGCCTCAGAACTTCTACTGCATT 4068320 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 ||||| || |||||| || | ||| | ||||||| || | | ||||| Sbjct 4068321 CACGTCGACAGGAAGTCAGAGGAATCCTTCTTGGCTGCGGTCAGGGGCCTCGCGTCCTGT 4068380 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| | || |||||| |||||||| || ||| | ||||| |||||||| ||| | Sbjct 4068381 TTCACGAACGTCTTCGTGGCCAGTCAGCTGGAGACCGTGGTGTATGCCTCATGGAGTCGC 4068440 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGC-TCAGTGCCA--TGGAAG 107984 || || || ||||| ||||| ||| | ||| ||| | || | ||||| |||||| Sbjct 4068441 GTCCAGGCAGACCTCAACTGCATGAAGGAC---CTCTATGGCCTGAGTGCGGACTGGAAG 4068497 Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTG 108044 ||||| | || ||||||| || ||||| || || ||||| ||||| ||| Sbjct 4068498 TACTTGATCAACCTTTGCGGGATGGATTTCCCTATCAAAACCAACCTGGAGATAGTCAGA 4068557 Query 108045 GCCCTCAAGATGTTGAAGGGTAAGAACA 108072 |||||| ||| | ||| |||||| Sbjct 4068558 AAGCTCAAGTCGTTAATGGGCGAGAACA 4068585 >seq84 Length=5970396 Score = 86.0 bits (94), Expect = 4e-12 Identities = 169/246 (69%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 107787 CCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCG 107846 ||||||||| | ||||| || |||||||||| |||| | ||| | || |||| || Sbjct 5712460 CCTCAGAACGTCTACTGCGTGCACGTGGATGAGAAGGCGACAGGTGCATTTAAAGTCGCT 5712519 Query 107847 GTCAAGGCCATTATTTC-CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGT 107905 || | | |||| | |||||||||||||| ||| |||| ||| ||| || || Sbjct 5712520 GTTCAC-CAATTACTGAACTGCTTCCCCAATGCCTTTCTGGCTTCCAAGCTGGAGCCTGT 5712578 Query 107906 GGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA 107965 ||| |||| | || || | || || ||||||||||| ||| | ||| ||| Sbjct 5712579 GGTCTATGGGGGCATCTCTAGGCTCCAGGCCGACCTGAACTGCATGAAGGAC---CTCGT 5712635 Query 107966 GAGCT---CAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAA 108022 | || | ||||| ||||| ||| | | || || |||||| ||| |||||| | || Sbjct 5712636 GGCCTCCACGGTGCCCTGGAAATACCTCATCAACACCTGCGGGCAAGATTTCCCCCTGAA 5712695 Query 108023 GACCAA 108028 |||||| Sbjct 5712696 GACCAA 5712701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348224567794554