Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq42 93.3 3e-14 seq65 89.7 4e-13 seq6 89.7 4e-13 >seq42 Length=18384968 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | || |||| ||| || || || ||||| || ||||||||||||| | Sbjct 13800125 CCACCCCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGAC 13800066 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| |||| || |||| ||| |||| || | || || ||| ||| Sbjct 13800065 AGAGTGCGACCATCCTCCAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGG 13800006 Query 18219 ACGCCTTCCTTAT-CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| | | | | ||| | |||||| | | | | ||||| | |||||| Sbjct 13800005 ATGCCCTCCTTGTCCTGGATCTTGGT-CTTGACGTTTTCGATGGTGTCGCTGGGCTCCAC 13799947 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| |||| || ||||| || || ||||| Sbjct 13799946 CTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 13799899 >seq65 Length=10584338 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| || |||| || || || || || || |||||||||||||| | Sbjct 10481006 CCACCACGGAGTCTCAGCACCAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAT 10480947 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | || ||||| || ||||| ||| |||| |||||||| ||||||| || Sbjct 10480946 AAAGTTCGGCCATATTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCCAGAGGA 10480887 Query 18219 ACGCCTTCCTTAT-CGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||||||| | | | |||| || || || | | | | || || |||||| Sbjct 10480886 ATTCCTTCCTTATCCTGGACTTTG--GCTTTTACGTTTTCTATCGTATCCGAGGGCTCAA 10480829 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | ||||||| | ||||| || | || || ||||| | ||||| || Sbjct 10480828 CCTCGAGGGTGATGGTCTTGCCTGTAAGGGTCTTGACAAAGACCTGCATCTT 10480777 >seq6 Length=51880498 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| || |||| ||| || || || || || |||||||||||||| | Sbjct 32416407 CCACCACGGAGTCTCAGCACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAT 32416348 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 |||| | |||||||| || ||||| ||| |||| | |||||| |||||| || Sbjct 32416347 GAAGTTTGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGA 32416288 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||| | || || || | | | | || || |||||| Sbjct 32416287 ATTCCTTCCTTATCCTGGGTTT-TGGCTTTTACATTTTCTATCGTATCCGAGGGCTCTTC 32416229 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| || | || ||||| || || ||||| Sbjct 32416228 CTCTAGGGTGATGGTCTTGCCCGTAAGGGTCTTTACGAAGATCTGCAT 32416181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379295821059645