Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq42 127 2e-24 seq40 113 4e-20 seq49 98.7 9e-16 seq76 95.1 1e-14 seq6 82.4 7e-11 >seq42 Length=18384968 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||||||||| ||||| ||||| || |||||| |||| || || || Sbjct 13799898 CATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 13799957 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| |||||| ||||| || || || ||||||||| ||| | || || |||| Sbjct 13799958 CGACACCATCGAAAACGTCAAGACCAAG-ATCCAGGACAAGGAGGGCATCCCCCCGGACC 13800016 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || || || |||| ||| |||| || | ||| || ||| || | Sbjct 13800017 AGCAGCGTCTCATCTTTGCCAGCAAGCAGCTGGAGGATGGTCGCACTCTGTCCGACTACA 13800076 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || ||||| || || || || ||||| || | ||| |||| || Sbjct 13800077 ACATCCAGAAAGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGGGGTGG 13800125 >seq40 Length=19049039 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || || ||||| ||||| || || || ||||| ||||| || || Sbjct 15941926 ACCTCATCTTTGCTGGTATATTCTACGATTTCTGTGCACAGGTTGCTGCACTTGATGGTT 15941867 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || | || ||||||||| || || || || ||||| |||||||||||||| || ||| Sbjct 15941866 CCAAGGTTCTGCTGGTTGCTCTTGCGGTTACAAGAATCTTTGTAGAGCATGTAGGGGGTG 15941807 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || ||||| ||| ||||||||||| || ||||| Sbjct 15941806 CCTGTCTCCGTCTGAGACTCGATGATAGCGTACCACA 15941770 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 31200 TTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTG 31259 |||| || ||||| || || ||||| || |||||| | || || || || ||||| Sbjct 15841126 TTTTTGTCAAGACCCTAACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGCGACACCA 15841185 Query 31260 TCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTC 31319 |||| | ||||| | || ||| ||||||||| | || |||||||||||| | | Sbjct 15841186 TCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAGCAGAGGC 15841245 Query 31320 TAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAA 31379 | || || || ||||| ||| |||||||| || || || || ||||| || | Sbjct 15841246 TGATCTTTGCAGGCAAGCAGCTGGAAGACAACCGCACCCTGTCTGACTACAACATCCAGA 15841305 Query 31380 AAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || || || || || ||||| || | || ||||| || Sbjct 15841306 AGGAGTCCACCCTGCACCTGGTCCTCCGTCTTAGGGGTGG 15841345 >seq49 Length=14824766 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| | || || ||||| Sbjct 11086095 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAG 11086154 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||||| ||||| | || ||| || |||||| | || |||||||| Sbjct 11086155 CGACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCA 11086214 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||| | || || || || ||||| ||| |||||||| Sbjct 11086215 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGAC 11086251 >seq76 Length=7797616 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || | Sbjct 4981036 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 4980977 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||||||| | || ||||||||| Sbjct 4980976 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAG 4980917 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| |||||||| || || || || ||| Sbjct 4980916 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCTGACTACAAC 4980857 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || || || ||||| || Sbjct 4980856 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCT 4980825 >seq6 Length=51880498 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| || || ||||| || |||||| | || | || || || Sbjct 32416181 ATGCAGATCTTCGTAAAGACCCTTACGGGCAAGACCATCACCCTAGAGGAAGAGCCCTCG 32416240 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | || ||| |||||||| | || || || ||| Sbjct 32416241 GATACGATAGAAAATGTAAAAGCCAAAACCCAGGATAAGGAAGGAATTCCTCCGGATCAG 32416300 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | | || || |||||||| ||| ||||||| ||| | | | || || || Sbjct 32416301 CAAAGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCAAACT-TCATCTGACTACAA 32416359 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||| || || || ||||| || ||||| || ||||| Sbjct 32416360 CATTCAGAAGGAGTCCACTCTGCACCTGGTGCTGAGACT 32416398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445708333354320