Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq40 114 2e-20 seq15 107 2e-18 seq9 107 2e-18 >seq40 Length=19049039 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || ||||| |||| | Sbjct 15940739 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTTGCGCG 15940680 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| |||||| | | ||||| ||||||| Sbjct 15940679 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATATCTAAATGCCA 15940620 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 || |||| ||| || || | ||||||| || Sbjct 15940619 AGGCTCCAGGTAAATAGCAAATGCTCCAGGACG 15940587 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || || || ||||| || ||||| | | Sbjct 15950533 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATC 15950474 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| || |||||||| || || |||||||| || || | | ||| Sbjct 15950473 GACTCATTATTCCCCAGGATCTGAGCAGTGGAGGCGGTCGGCATTGGGGCAATAAGCAAA 15950414 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 15950413 CTGTTTCTTATACCATA 15950397 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 64008 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATG 64067 || || | ||| |||||||| ||||| | || || | || || || || || || ||| Sbjct 15930971 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACAGCAATCCTTGCTGCCAGGATG 15930912 Query 64068 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64127 |||||||| || || | ||||| | || || || |||| || |||| || |||||| Sbjct 15930911 GCATAATCGGGGTGCTTCGTAGTCAAGGTTGCAGCAGTTTCAGCAGCCAACGTATCCAAT 15930852 Query 64128 TCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 ||||| || || |||||| | |||| ||||| || || ||||| Sbjct 15930851 TCTACTGTGGTGACTCCACTGTATAAGCCTTGGATTACTTTCAT 15930808 >seq15 Length=37907650 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| ||| || | ||||| || || ||||||||||||| ||| Sbjct 6294941 GTTACTTTCTATGATGTATATATTATTCTGCAAGCCTTTATACTGACTACTGCAGTATTT 6294882 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| ||| ||| ||| ||| || ||||| |||||||||||||| ||| ||| | |||| Sbjct 6294881 CTTGGTCTAACTGCATATACCCTGCAATCCAAGAGAGATTTCAGCAAATTTGGAGCAGG 6294823 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 188170 CGTGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGC 188229 || ||||||| |||||||| ||||||||||| | ||||| ||||| ||||||||||||| Sbjct 6305885 CGCGCTCCTCGATCGAGGATGACTTCAACTACGGCAGCTGCGTGGCCTCTGCCAGCGTGC 6305826 Query 188230 ACATACGAATGG 188241 |||| || |||| Sbjct 6305825 ACATCCGGATGG 6305814 Score = 82.4 bits (90), Expect = 1e-10 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437 |||||| | || |||| || |||||||||||| ||||||| || ||||||||||| ||| Sbjct 6299040 GGATCTCTGGGTATGATATTTGCATTGACTTTAAACAGACACAAGCATCCCCTGAACCTG 6298981 Query 188438 TACCTACTTTGTGGATTT 188455 || || |||| ||||||| Sbjct 6298980 TATCTTCTTTTTGGATTT 6298963 >seq9 Length=49469770 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| |||||||| ||||| || || | ||| || Sbjct 15784990 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATCAGACCTCTCTTCTTC 15785049 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 15785050 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 15785108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629735558384880