Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq15 163 4e-35 seq9 111 2e-19 seq40 107 3e-18 >seq15 Length=37907650 Score = 163 bits (180), Expect = 4e-35 Identities = 155/198 (78%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || || ||| | |||||| || ||| ||| |||| ||||||||||| ||||| Sbjct 6292378 TTACTTTTTGTTAACTGCTTCCAGAAAACGTAGCAGGTGCAGAAACAGATTGATAATATC 6292437 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 |||||||| |||| | || |||||||| ||||| || ||||| ||||| || ||||| Sbjct 6292438 CAAGTAGAGGCTGATGGCAGCCAACACATACTCTTCTGGTGAGAGTTTATGCATCAGTGA 6292497 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| ||||| ||||| ||||| || ||||| | |||||| || ||||| || |||||| Sbjct 6292498 GTGGGTGTCGTAGATGATGAAGCCACAGAAAAGAAGGGCTCCTCCAGCAGCCACGACCAG 6292557 Query 9407 CTCCACTGTTTCACTTTG 9424 ||||||||| ||||| || Sbjct 6292558 CTCCACTGTCTCACTGTG 6292575 Score = 138 bits (152), Expect = 1e-27 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| ||||| || ||||||||||| ||| ||||| Sbjct 6294823 CCTGCTCCAAATTTGCTGAAATCTCTCTTGGATTGCAGGGTATATGCAGTTAGACCAAGA 6294882 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| || || ||||||| || | || ||||||||||||||||| Sbjct 6294883 AATACTGCAGTAGTCAGTATAAAGGCTTGCAGAATAATATATACATCATAGAAAGTAAC 6294941 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||| |||||||| ||||| ||||||| ||||||||||| ||||||| Sbjct 6305814 CCATCCGGATGTGCACGCTGGCAGAGGCCACGCAGCTGCCGTAGTTGAAGTCATCCTCGA 6305873 Query 9907 TGGAGGAGCACGCGTAGAGG 9926 | ||||||| || |||| || Sbjct 6305874 TCGAGGAGCGCGGGTAGCGG 6305893 >seq9 Length=49469770 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 15784990 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATCAGACCTCTCTTCTTC 15785049 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 15785050 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 15785108 >seq40 Length=19049039 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 15950533 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATC 15950474 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| || |||||||| || || |||||||| || || | | ||| Sbjct 15950473 GACTCATTATTCCCCAGGATCTGAGCAGTGGAGGCGGTCGGCATTGGGGCAATAAGCAAA 15950414 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 15950413 CTGTTTCTTATACCATA 15950397 Score = 105 bits (116), Expect = 9e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | ||| || | | Sbjct 15940739 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTTGCGCG 15940680 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || |||||||| ||||| || | ||| |||||| | | ||||| ||||||| Sbjct 15940679 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATATCTAAATGCCA 15940620 Query 66176 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 66208 || |||| ||| || || | ||||||| || Sbjct 15940619 AGGCTCCAGGTAAATAGCAAATGCTCCAGGACG 15940587 Score = 102 bits (112), Expect = 1e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 66801 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATG 66860 || || | ||| |||||||||||||| | || || || || || || || || | ||| Sbjct 15930971 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACAGCAATCCTTGCTGCCAGGATG 15930912 Query 66861 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 66920 |||||||| || || | ||||| | || || || |||| || |||| || |||||| Sbjct 15930911 GCATAATCGGGGTGCTTCGTAGTCAAGGTTGCAGCAGTTTCAGCAGCCAACGTATCCAAT 15930852 Query 66921 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||||| || || |||||| | |||| |||||||| || ||||| Sbjct 15930851 TCTACTGTGGTGACTCCACTGTATAAGCCTTGGATTACTTTCAT 15930808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658087064765640