Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_003521.1 Length=241087 Score E Sequences producing significant alignments: (Bits) Value seq87 87.8 3e-12 >seq87 Length=5623717 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 77353 CCGGGCACCAGCAGGGTGGAGTAGCACAGGTTGTGGGCCATGATGATGGAGGGGTAGAGG 77412 |||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||| || Sbjct 3207473 CCGGGCCGCAGCAGGGTGGTGTAGCACAGGTTGTGGGCCATCATGATGGACGGGTACAGC 3207532 Query 77413 CTGGCGAAGTCGAAGACCGCCACGGGGTCGTTGTAGTA 77450 || |||||| | | || | |||| | | |||||| Sbjct 3207533 GAGGAGAAGTCCAGGGTGGCGATGGGGACATCGTAGTA 3207570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771249921968520