Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq49 107 2e-18 seq42 107 2e-18 seq76 104 2e-17 seq6 91.5 1e-13 seq40 87.8 2e-12 seq24 82.4 8e-11 >seq49 Length=14824766 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || || |||| |||||| ||||| || || Sbjct 11086292 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCT 11086233 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| |||||||| ||||||||||| || ||| || || Sbjct 11086232 GCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTG 11086173 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | |||||| |||| |||||||| | ||| | |||||||| |||| || Sbjct 11086172 ACATTTTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 11086113 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 11086112 TTCACGAAGATCTGCAT 11086096 >seq42 Length=18384968 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||| | ||| |||||||| || ||||| || ||| || |||| || || ||||| Sbjct 13800102 GTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCCTCCAGCTG 13800043 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || | ||| |||| ||||| ||||| || || || ||||| || ||||| ||| || Sbjct 13800042 CTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 13799983 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | ||| | |||||| ||||||||||||| | ||| | |||||||| || Sbjct 13799982 GGTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGT 13799923 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || || |||||||| || ||||| Sbjct 13799922 CAGGGTCTTTACGAAGATCTGCAT 13799899 >seq76 Length=7797616 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || || || |||| | Sbjct 4980822 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCG 4980881 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | ||||| |||||||| |||||||| || Sbjct 4980882 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTA 4980941 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | |||||| ||||||||||||| | ||| | Sbjct 4980942 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 4981001 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || ||||| || ||||| Sbjct 4981002 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4981036 >seq6 Length=51880498 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || || |||| ||||| ||||| || || Sbjct 47505255 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 47505196 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || ||||| |||||||| || | | ||| || || Sbjct 47505195 GCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTACCTG-GATCTTGGCCTTG 47505137 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| |||| |||||||| | ||| | ||||||||||||| || Sbjct 47505136 ACATTCTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 47505077 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 47505076 TTCACGAAGATCTGCAT 47505060 >seq40 Length=19049039 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || || |||| |||||| ||||| || || Sbjct 15841315 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGTTGTCTTCCAGCTGCTTGCCT 15841256 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| |||||||| |||||||| || || ||| || || Sbjct 15841255 GCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTG 15841196 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | | || | |||||| ||||||| ||||| | ||| | ||||||||||| Sbjct 15841195 ACATTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCGGT 15841143 >seq24 Length=26830293 Score = 82.4 bits (90), Expect = 8e-11 Identities = 112/155 (72%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | ||||| |||||||| |||||||| || Sbjct 11934297 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGTTCGGGAGGGATGCCTTCCTTA 11934238 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||| || ||||||||||||| | ||| | Sbjct 11934237 TCCTGGATCTTGGCCTTGACATTCTCGA-TGTTTCATTGGGCTCCACCTCCAGGGTGATG 11934179 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 11934178 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 11934144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495999381463200