Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq9 111 2e-19 seq40 104 3e-17 >seq9 Length=49469770 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| || Sbjct 15784990 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATCAGACCTCTCTTCTTC 15785049 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| || |||||||| Sbjct 15785050 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 15785109 Query 50104 ACAAGTCTCTCTCC 50117 || | ||||| || Sbjct 15785110 ACCACCCTCTCCCC 15785123 >seq40 Length=19049039 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | | Sbjct 15950533 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATC 15950474 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| || |||||||| || || || ||||| || || | | ||| Sbjct 15950473 GACTCATTATTCCCCAGGATCTGAGCAGTGGAGGCGGTCGGCATTGGGGCAATAAGCAAA 15950414 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 15950413 CTGTTTCTTATACCATA 15950397 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 80680 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATG 80739 || || | ||| |||||||| ||||| | || || || || || || || || | ||| Sbjct 15930971 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACAGCAATCCTTGCTGCCAGGATG 15930912 Query 80740 GCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 80799 |||||||| || || | ||||| | || || || |||| || |||| || |||||| Sbjct 15930911 GCATAATCGGGGTGCTTCGTAGTCAAGGTTGCAGCAGTTTCAGCAGCCAACGTATCCAAT 15930852 Query 80800 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 ||||| || || |||||| | |||| |||||||| || ||||| Sbjct 15930851 TCTACTGTGGTGACTCCACTGTATAAGCCTTGGATTACTTTCAT 15930808 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || ||||| || | | || Sbjct 15940735 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTTGCGCGCTGT 15940676 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| |||||| | | ||||| ||||||| || Sbjct 15940675 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATATCTAAATGCCAAGGC 15940616 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 15940615 TCCAGGTAAATAGC 15940602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718175236510440