Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq65 82.4 6e-11 >seq65 Length=10584338 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||| ||||||||||| ||||| ||||| |||| | ||| | | | || Sbjct 10480989 CACCAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAAAGTTCGGCCATATTC 10480930 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | || ||||| |||||||||| || | || || || || Sbjct 10480929 CAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCCAGAGGAATTCCTTCCTTATCCTG 10480870 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 | ||| |||||| | | | ||||| ||||| |||| ||| ||||| || Sbjct 10480869 GACTTTGGCTTTTACGTTTTCTATCGTATCCGAGGGCTCAACCTCGAGGGTGATGGTCTT 10480810 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 ||||| | || |||||||| | ||||| || Sbjct 10480809 GCCTGTAAGGGTCTTGACAAAGACCTGCATCTT 10480777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414520146792874