Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq49 161 2e-34 seq6 154 3e-32 seq67 150 4e-31 seq8 118 2e-21 seq9 114 3e-20 seq24 98.7 2e-15 seq13 87.8 4e-12 >seq49 Length=14824766 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| || || | |||||||| || || || || Sbjct 11086292 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCT 11086233 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || || ||||| || |||||||||||||| ||||| || || Sbjct 11086232 GCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTG 11086173 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| ||||| ||||| ||||| || || || ||||| ||||| || || Sbjct 11086172 ACATTTTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 11086113 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 11086112 TTCACGAAGATCTGCAT 11086096 >seq6 Length=51880498 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || || || || || || | || || || |||||||| || ||||||||| |||| Sbjct 32416398 AGTCTCAGCACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGATGAAGTTTGG 32416339 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || || |||||||| || | || || ||||| ||||| |||||||| Sbjct 32416338 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCC 32416279 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| | || |||||||||||||||| ||||| || ||| ||||||| || Sbjct 32416278 TTATCCTGGGTTTTGGCTTTTACATTTTCTATCGTATCCGAGGGCTCTTCCTCTAGGGTG 32416219 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| || ||||| || |||||||| Sbjct 32416218 ATGGTCTTGCCCGTAAGGGTCTTTACGAAGATCTGCAT 32416181 >seq67 Length=9509266 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || |||||||| || || ||||||| | ||| || ||||| || || || |||||||| Sbjct 6398346 TCCTTCTGAATGTTGTAATCAGATAAACTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 6398287 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || || || ||||| ||||| |||||||| |||||||| || || |||| ||||||| Sbjct 6398286 ATCAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTATACATTT 6398227 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 |||| ||||| || || ||||| || || || ||||| || ||||| || || ||| Sbjct 6398226 TCTATTGTATCCGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACA 6398167 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 6398166 AAGATCTGCAT 6398156 >seq8 Length=54109746 Score = 118 bits (130), Expect = 2e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||| | | | |||||||| | ||||| | || || | || || ||| Sbjct 34331772 GCTTTATGGTGGTACTTTGTATCTAAAGGTGTTGAATATTTGGACACAGTATTTTTTATC 34331831 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 ||||| |||||| |||||| || ||| || ||||||||||| || | ||| |||||| Sbjct 34331832 CTACGGAAGAAAAACAATCAAGTTTCTTTCCTTCATGTATATCACCACTGTACGATGTTT 34331891 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| || ||||| ||| | ||||| ||||||| Sbjct 34331892 ACATTGTGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACAAG 34331934 >seq9 Length=49469770 Score = 114 bits (126), Expect = 3e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || || ||| | || || ||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 15785123 GGGGAGAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 15785064 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| ||||||| ||||| || ||||| ||| | ||||| || || ||| | Sbjct 15785063 GCTATATTCTGGCTGAAGAAGAGAGGTCTGATGCCTGGACTCACTTTTTCCAATGAACTC 15785004 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 15785003 ATCAGCAGAGATGAAG 15784988 >seq24 Length=26830293 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 174432 AAGGAGTATTAATATCTACATGCTCAAAAACTGTTAATTCtttttttAACTTCATAGGTA 174491 ||||||| || ||||||| ||||||||| ||||| ||||| || |||||||| | |||| Sbjct 18025583 AAGGAGTGTTGATATCTATATGCTCAAAGACTGTAAATTCCTTCTTTAACTTTACTGGTA 18025524 Query 174492 ATGAGCAAGCCCTGTGCAACTCCGCTTTCAAACAATAACGTATACTGCCGTATTTACTTT 174551 |||| |||||||||||| ||||||| ||||| || | |||||| | | | || Sbjct 18025523 GAAGCCAAGGCCTGTGCAACTCGGCTTTCACCCAATAGCGCACACTGCCATGTCGGCCTT 18025464 Query 174552 CAAATGA 174558 | ||||| Sbjct 18025463 CGAATGA 18025457 >seq13 Length=39823089 Score = 87.8 bits (96), Expect = 4e-12 Identities = 138/197 (70%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 104367 ATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAA 104426 |||| | ||||| || |||||||||| | || | ||||| |||| || |||| | Sbjct 7253887 ATTCCTGCTGAAAGTTGTAGTCAGATAAAATTTGTTCATCTTCAGGTTGCTTGCCAGTGA 7253946 Query 104427 AAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACAT 104486 | || || | || ||||||||||| |||||||| |||||||| | || |||| |||| Sbjct 7253947 AGATCAGTCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGGTTTTGACTTTCACAT 7254006 Query 104487 TTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTA 104546 ||| | |||| || || | || || || | ||||| || || || || || | Sbjct 7254007 TTT---CAGTATGCAGGGGCTCAGCATCAAGGGTGCTGGTCTTCCCTGTTAGAGTCTTGA 7254063 Query 104547 CAAATATCTGCATTTTG 104563 |||| ||||||| ||| Sbjct 7254064 CAAAGGTCTGCATCTTG 7254080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151244666365068