Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq4 129 5e-25 >seq4 Length=59374630 Score = 129 bits (142), Expect = 5e-25 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | || |||||||| |||||||| || | ||||||||| Sbjct 41622928 GGTTACCTGGGATGCCAAGCCTTGTCAGAGATGATCCAGTTTTATCTGAAGGAGGTGATG 41622987 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || |||||||| ||||| || || |||||||| |||||||| |||||||| || |||||| Sbjct 41622988 CCCCAGGCGGAGAATCATGGCCCAGACATCAAGGAGCACGTGAACTCGCTCGGGGAAAAG 41623047 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCG 129019 || || || || || || | ||||| Sbjct 41623048 CTGAAGACTCTCCGACTGAGGCTGCG 41623073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163 ||| || ||||| |||||||||||||| ||||| |||||||||||||||||| | ||||| Sbjct 41625076 AGGTGTGTACAAAGCCATGAGCGAGTTTGACATCTTCATCAACTACATAGAAACCTACAT 41625135 Query 129164 GACTAC 129169 ||| || Sbjct 41625136 GACCAC 41625141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447692074913520