Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq4 104 2e-17 >seq4 Length=59374630 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| |||| |||||||| ||||| || || | ||||| ||||| ||||| Sbjct 41622937 GGATGCCAAGCCTTGTCAGAGATGATCCAGTTTTATCTGAAGGAGGTGATGCCCCAGGCG 41622996 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || ||||| || || ||||| || || ||||| || || || || |||||||||||||| Sbjct 41622997 GAGAATCATGGCCCAGACATCAAGGAGCACGTGAACTCGCTCGGGGAAAAGCTGAAGACT 41623056 Query 127291 TTGAGACTTCGACTGCG 127307 | |||| | ||||| Sbjct 41623057 CTCCGACTGAGGCTGCG 41623073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 127379 AGCTTCAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTCATCAACTACA 127438 |||| || || | ||| |||||||| |||||||| ||||||||||| ||||||||||||| Sbjct 41625063 AGCTCCAAGAGAAAGGTGTGTACAAAGCCATGAGCGAGTTTGACATCTTCATCAACTACA 41625122 Query 127439 TCGAGACTTACATG 127452 | || || |||||| Sbjct 41625123 TAGAAACCTACATG 41625136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429999780537752