Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 4e-12 >seq6 Length=51880498 Score = 86.0 bits (94), Expect = 4e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 25781 TGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTT 25840 |||| ||||| || |||| |||||||||||| || || || || || ||||| || || | Sbjct 43799761 TGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCCTCCT 43799702 Query 25841 CCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATC 25899 | ||| | | | || || | |||| ||| |||| |||| | || || |||||||| Sbjct 43799701 CTCTG-GTTGAGAATCCAAGGCTGTCCAGAAATTCTCGGGAAGCGTTCGCATCCCAGATT 43799643 Query 25900 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 || || ||||| | || || ||||| | |||||||| || Sbjct 43799642 TTCACTCCCTTGGCAGACAGTTCTTTAGCATTTGTGGATCC 43799602 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/121 (78%), Gaps = 3/121 (2%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||| ||||| ||||| || || | |||||| Sbjct 43802725 GCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACGCCCAGGCCCATG 43802666 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCG-TCGCTCACGTAAAACTGAC 25624 || ||| ||||||||||| | ||| || || ||||| || || || ||||| ||||| | Sbjct 43802665 TCTCCC-GACCTCTGGTACAACTGGCAGGACAGCTCGCCGTTCACT-ACGTAGAACTGGC 43802608 Query 25625 A 25625 | Sbjct 43802607 A 43802607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340094400505233