Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq67 84.2 2e-11 >seq67 Length=9509266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || |||| |||||| |||||||||||||||| || ||| | || ||||||||| Sbjct 6398358 TGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGATAAACTTCGGCCATCTTCCAGCTGC 6398299 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || | | |||||||| || | | |||||| ||| ||||| Sbjct 6398298 TTGCCAGCAAAGATCAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATTTT- 6398240 Query 48644 TGCTTGATAGA--CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 |||| ||| | |||| ||||| | | ||| ||||| || ||||| || || | Sbjct 6398239 GGCTT-ATACATTTTCTATTGTATCCGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCCG 6398181 Query 48702 TGAGAGTTTTCACAAAAATCTGCATCGTG 48730 | || || || ||||| |||||||||||| Sbjct 6398180 TAAGGGTCTTGACAAAGATCTGCATCGTG 6398152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421197698596421