Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq4 118 1e-21 >seq4 Length=59374630 Score = 118 bits (130), Expect = 1e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| ||||||||||| || ||| |||| || |||||||||||||| ||| |||| || | Sbjct 41622926 AGGGTTACCTGGGATGCCAAGCCTTGTCAGAGATGATCCAGTTTTATCTGAAGGAGGTGA 41622985 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| ||||| || ||||| | ||| || ||| |||||||||||||| || || || | Sbjct 41622986 TGCCCCAGGCGGAGAATCATGGCCCAGACATCAAGGAGCACGTGAACTCGCTCGGGGAAA 41623045 Query 10260 ATCTAAAGACCCT 10272 | || ||||| || Sbjct 41623046 AGCTGAAGACTCT 41623058 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| || |||||||||||||| || |||||||| || || ||||| | Sbjct 41625063 AGCTCCAAGAGAAAGGTGTGTACAAAGCCATGAGCGAGTTTGACATCTTCATCAACTACA 41625122 Query 10419 TAGAAGCATACATGACCATGA 10439 ||||| | |||||||||| || Sbjct 41625123 TAGAAACCTACATGACCACGA 41625143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547307897016960