Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq4 147 3e-30 seq63 116 5e-21 >seq4 Length=59374630 Score = 147 bits (162), Expect = 3e-30 Identities = 204/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || || ||| | |||| || ||| || | ||| | ||||| || Sbjct 56649816 AAGGGACAGCCCTTCACATTGTTGCAGATGAGGCTCTGAATGGAGGCAGTGTTGACAATT 56649757 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 || ||||| ||||| || || ||||| || |||||||| ||||| ||||| Sbjct 56649756 TTGAAGCCCACTTCTCCACCAAACGTGCTTGGCTTCCAGTAGTTAGGGGAACAGATAGGA 56649697 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || ||||||||||||| ||||| || |||||||||| || | ||| |||| || ||| Sbjct 56649696 TTACCCATGAGGCCTTTCAGGGAGAATGGAGCCCCCATTTCTACCATGGTCTCCCCAAAG 56649637 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 ||||||| ||||| || ||||||||| | | | ||||| |||||| || || ||| Sbjct 56649636 ATGGCGTCTGGACGAGGTCTTTCCACCAGAAGGGCAGGGTACAGCTCCACTGCATCAATG 56649577 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || || || || | || ||||| || ||||| ||||||| Sbjct 56649576 TCGCCATAGAGCGCTTCCAACTCCGCAGCCATCTCCTTCTCTCCTG 56649531 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| || | || ||||| |||||| ||||| || | || || || ||||||||| Sbjct 56648179 GTCTGGAATAACTGCTCGTCGTCCCATTCGGGATGCTCCTGCTTGAGCACGTCGCACACT 56648120 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 | ||| || |||| | |||||| || ||||||||||| || ||||||||||| ||||| Sbjct 56648119 CGGTTATGCTCCCGTAACCAGATTGTGGCGTACATCATCAGGCCAGGCACCAGACCAAAC 56648060 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 | || || || ||||| | |||| | || || || | ||| || |||| ||| | | Sbjct 56648059 ACTTCCTGGCCCACAGCGAAGCGCAGCTGCTCAGGGACGTGGGGCGGGTAGAACATCTCC 56648000 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTG 9863 |||| ||| |||| | ||| || |||| ||| || || || | ||| Sbjct 56647999 GCCTGTGTGTCTCTGACTGTGGGAGGGTACACTTCTCCATCGATGACCTG 56647950 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 ||| |||||||||||||||||| | ||||| || || || ||| | ||| ||| | || Sbjct 56647205 TCTCACCCCATGTCCCAGTCCTCTGGTGAAAGCTGGTCCCCGCTTCTGATCCGTCTTGAA 56647146 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||||||||||||||| || || |||| ||||| ||||| | ||| |||||||| || || Sbjct 56647145 AAACTGGTGCGTGAAGTGCTGAGCAAAGAAGGCGAACATCATGTTTGTGCCCTGCGGGTC 56647086 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || |||| | || | || ||| ||| ||||||| Sbjct 56647085 AGGGATGAACTTTCTTCTCAGGAGAACTTTCTCCACAA 56647048 Score = 104 bits (114), Expect = 3e-17 Identities = 184/266 (69%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 9320 CACTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGG 9379 |||| || | ||||||||| || || ||||| || | || | ||| |||| ||||| Sbjct 56648784 CACTCACCCTGCCAGCTATCTGCTTGGTGAATGACTGGACAAACTGCGTAAGTCCGTGCT 56648725 Query 9380 TCATGAGTATGGAATTGTTGTAAACGAAGTTAATG-TAGTCATACTTTGTTTTATCAATC 9438 || || ||||| |||||||| | ||| | || |||| ||||| | |||||| Sbjct 56648724 CCAGCAGGATGGAGTTGTTGTAGA-GAAACTGTTGATAGTTGTACTTCTGGTCATCAATG 56648666 Query 9439 TCAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9498 | ||| ||||| |||| ||| | |||||||||||| | |||| ||||| || || Sbjct 56648665 TGAAAGGCATCGGGCAGGAGTGGATGCCAGTGATAGAGTGTGTTGAACTCAGAGGCAATC 56648606 Query 9499 CGATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAG 9558 || || |||||||||||| | || ||||| || || | |||| | | ||| Sbjct 56648605 CGGTTCTGGTACTGGAACTGCTGGCTGAAAAGCAGCTCTGGGTCAAACTTTAGTTTGAAG 56648546 Query 9559 TGGTAGCCGCTGAGCTGCTGAACATA 9584 || |||||||| | ||||| || || Sbjct 56648545 TGATAGCCGCTCAAGTGCTGCACGTA 56648520 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 10288 CACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGT 10347 ||||||| || || | || ||||| || |||| || || ||||| | |||| || Sbjct 56646718 CACCTTTCACTCCCACGGGGGTTGGGCAGTCGTCAGCCACGGGAGGCAAGGCTCTTGTGT 56646659 Query 10348 AATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGG 10407 | ||||| ||||||||||| ||||||||| | ||| |||||| | | ||||| | | Sbjct 56646658 AGTAGGACAGATTGGAGAAGGCTTCCCAGTTCTTGTAGCCGTAGTGCACATTGTATGTTG 56646599 Query 10408 GAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 | || ||||| |||| || ||||| ||||| Sbjct 56646598 GCGGACTGTCGATCAGATGTGATCTGGCTGAA 56646567 >seq63 Length=10623516 Score = 116 bits (128), Expect = 5e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||||||| || ||||| || || || || ||||| || |||||||| | || | Sbjct 10348411 TCTTGACGAGGTTGAAGCCCACCTCACCACCAAACGTGCTTGGCTTCCAGTACTCTGGAG 10348470 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| |||| | | ||| || ||||||||||| || ||||| | ||||| |||| Sbjct 10348471 AACAGATGGGGTTCCCTAAGAGACCCTTGAGGGAAAAGGGTGCCCCAATCTCGATCATGC 10348530 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| |||||||||| ||| || || ||| || | | || || | ||| || |||| Sbjct 10348531 TCTCCCCGAAGATGGAGTTCGGTTGGCACTTCTCGAGAAGCAACCCTGGGTAGAATTCCA 10348590 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || |||||||| || || | | || || ||||| || || | ||||||| Sbjct 10348591 AGGCATCGATGTCCCCATATAACTCTTCCAGCTCCGCAGCCATCTCAGTCTCTCCTG 10348647 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/141 (75%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083 || || |||||||| |||| |||| ||||| | || || || |||| | ||| Sbjct 10359331 GTACTCACCCCATGGCCCAAAGCTTTGGTGAAACCTGGACCCATCTTGCCAGA--AGTTT 10359388 Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143 | || ||||| || ||||| ||||| |||||||||||||||| | ||||||||| |||| Sbjct 10359389 TGAAGAACTGATGGGTGAAGTGTTGTGCAAAAAAGGCAAACATGACGTTGGTGCCTTGGG 10359448 Query 10144 GATCGGGAGTGAAGGTCCTCC 10164 | || ||| |||| |||||| Sbjct 10359449 GGTCAGGAATGAACTTCCTCC 10359469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708432505788240