Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq24 111 1e-19 seq67 107 2e-18 seq6 105 6e-18 seq17 102 7e-17 seq65 96.9 3e-15 seq76 95.1 1e-14 seq49 95.1 1e-14 seq42 87.8 2e-12 >seq24 Length=26830293 Score = 111 bits (122), Expect = 1e-19 Identities = 167/236 (71%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| || || | |||| |||| |||| ||||| || || ||||| || | ||| || Sbjct 11934376 TTAGACACCACTCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTA 11934317 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 || || |||| | ||| |||||||| || || ||||||| | || ||||| || Sbjct 11934316 GTCAGACAGGGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGTTC 11934257 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 ||||| || ||||| || || | || || |||||||| ||| || ||| | | Sbjct 11934256 GGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGAT-GTTTCATTGGG 11934198 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || | |||||||| || ||||| || || ||||||||||||||||||| Sbjct 11934197 CTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 11934142 >seq67 Length=9509266 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 94789 CAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTT 94848 || || || ||||| ||||| ||| | ||||| || | ||| ||||| | | | Sbjct 6398374 CAGTCTCAGCACCAGGTGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGATAAACTTCG 6398315 Query 94849 GGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTC 94908 | ||| |||||||| || || ||||||| | ||||||||||||||||||||| ||||| Sbjct 6398314 GCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCTGGAGGAATTCCTTC 6398255 Query 94909 TTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGT 94968 || || | ||||| || | || | | || || | | | || || || | || Sbjct 6398254 CTTATCCTGGATTTTGGCTTATACATTTTCTATTGTATCCGAGGGCTCAACCTCGAGGGT 6398195 Query 94969 GATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || || ||||| || || |||||||||||||| Sbjct 6398194 GATGGTCTTGCCCGTAAGGGTCTTGACAAAGATCTGCAT 6398156 >seq6 Length=51880498 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGG 94850 || || ||||| ||||| ||| || ||||| || | ||| || || | | | ||| | | Sbjct 32416396 TCTCAGCACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGATGA-AGTTTGGC 32416338 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||||||| || || ||||||| |||||||||||||| |||||||| ||||| | Sbjct 32416337 CATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCT 32416278 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | |||| || || || | | || || | | | || | || | |||| Sbjct 32416277 TATCCTGGGTTTTGGCTTTTACATTTTCTATCGTATCCGAGGGCTCTTCCTCTAGGGTGA 32416218 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || ||||| || || || ||||||||||| Sbjct 32416217 TGGTCTTGCCCGTAAGGGTCTTTACGAAGATCTGCAT 32416181 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| || || ||||| || | ||| || || || ||| | ||| ||| Sbjct 47505267 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 47505208 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || ||||||| | || ||||| || ||||| || ||||| || | | Sbjct 47505207 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTACC-TGG 47505149 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| ||| ||||| | | || || || | |||||||| || Sbjct 47505148 ATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTG 47505089 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| ||||||||||| Sbjct 47505088 CCGGTCAGGGTCTTCACGAAGATCTGCAT 47505060 >seq17 Length=35549867 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| || || |||||||| | ||| || || || ||| | ||| ||| Sbjct 30593100 ACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 30593041 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || ||||||| | || | ||| || ||||| || ||||| || || | Sbjct 30593040 AGCTGCTTGCCTGCAAAGATCAGCCTCTTCTGGTCGGGAGGGATGCCTTCCTTATCCTGG 30592981 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| ||| ||||| ||| || || || | |||||||| || Sbjct 30592980 ATCTTGGCCTTGACATTCTCGATGGTGTCGCTGTGCTCAACCTCCAGGGTGATGGTCTTG 30592921 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || ||||||||||||||||||| Sbjct 30592920 CTGGTCAGGGTCTTCACAAAGATCTGCATGC 30592890 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || || ||||| |||| ||| || ||||| || | ||| || || | | | | Sbjct 25101818 TCTCAGCACCAGATGCAGAGTGGACTCCTTCTGAAGGTTGTAGTCAGATAAACTTCGGCC 25101877 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||| | | |||||||||||| |||||||| ||||| || Sbjct 25101878 ATCTTCCAGCTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCCGGAGGAATGCCTTCCTT 25101937 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||||| || || || | | || || | | | || | |||| ||||| Sbjct 25101938 TTCCTGGATTTTGGCTTTTACATGTTCTATCGTATCTGAGGGCTCAATCTCAAGGGTGAT 25101997 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || |||||||| || || ||||||||||| Sbjct 25101998 GGTCTTGCCTGTAAGAGTCTTGACGAAGATCTGCAT 25102033 >seq65 Length=10584338 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || || ||||| |||| |||||| ||||| || | ||| || || | ||| | Sbjct 10480995 TCTCAGCACCAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAAAGTTCGGCC 10480936 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 || |||||||| || || ||||||| | |||||||||||| ||||||| ||||| || Sbjct 10480935 ATATTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCCAGAGGAATTCCTTCCTT 10480876 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | | ||| || || ||| | | || || | | | || || || | ||||| Sbjct 10480875 ATCCTGGACTTTGGCTTTTACGTTTTCTATCGTATCCGAGGGCTCAACCTCGAGGGTGAT 10480816 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || ||||| || || ||||||| |||||| Sbjct 10480815 GGTCTTGCCTGTAAGGGTCTTGACAAAGACCTGCAT 10480780 >seq76 Length=7797616 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||||| || || ||||| || | ||| || || || ||| | Sbjct 4980822 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCG 4980881 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||| || ||||| || ||||| || Sbjct 4980882 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTA 4980941 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| ||| ||||| | | || || || | |||||| Sbjct 4980942 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 4981001 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || ||||| ||||||||||| Sbjct 4981002 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4981036 >seq49 Length=14824766 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||| || ||||| || |||||||| Sbjct 11086250 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTA 11086191 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| ||| ||||| | | || || || | |||||| Sbjct 11086190 TCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATG 11086131 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || ||||| ||||||||||||| Sbjct 11086130 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGC 11086094 >seq42 Length=18384968 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| || || || || || | ||| || ||| || |||| |||||| Sbjct 13800108 CACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCCTC 13800049 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || | | ||||||| | | ||||| || || || || || || ||||| | Sbjct 13800048 CAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 13799989 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || | ||||||| ||| ||||| | | || || || | |||||||| || Sbjct 13799988 GATCTTGGTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTT 13799929 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || |||||||||||| Sbjct 13799928 GCCCGTCAGGGTCTTTACGAAGATCTGCATG 13799898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448232804467560