Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq9 116 5e-21 seq40 113 6e-20 >seq9 Length=49469770 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| || Sbjct 15784990 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATCAGACCTCTCTTCTTC 15785049 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 15785050 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 15785108 >seq40 Length=19049039 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | | Sbjct 15950533 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATC 15950474 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| || |||||||| || || |||||||| || || | | ||| Sbjct 15950473 GACTCATTATTCCCCAGGATCTGAGCAGTGGAGGCGGTCGGCATTGGGGCAATAAGCAAA 15950414 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 15950413 CTGTTTCTTATACCATA 15950397 Score = 109 bits (120), Expect = 7e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || ||||| || | | Sbjct 15940739 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTTGCGCG 15940680 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || |||||||| ||||| || | ||| |||||| | | ||||| ||||||| Sbjct 15940679 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATATCTAAATGCCA 15940620 Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364 || |||| ||| || || | ||||||| || Sbjct 15940619 AGGCTCCAGGTAAATAGCAAATGCTCCAGGACG 15940587 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 63957 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 64016 || || | ||| |||||||| ||||| | || || || || || || || || || ||| Sbjct 15930971 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACAGCAATCCTTGCTGCCAGGATG 15930912 Query 64017 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64076 |||||||| || || | ||||| | || || || |||| || |||| || |||||| Sbjct 15930911 GCATAATCGGGGTGCTTCGTAGTCAAGGTTGCAGCAGTTTCAGCAGCCAACGTATCCAAT 15930852 Query 64077 TCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||||| || || |||||| | |||| ||||| || || ||||| Sbjct 15930851 TCTACTGTGGTGACTCCACTGTATAAGCCTTGGATTACTTTCAT 15930808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622866053340360