Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq40 93.3 4e-14 seq76 87.8 2e-12 seq49 82.4 7e-11 >seq40 Length=19049039 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 ||||| || || |||| || || | || ||| | || |||||| ||| |||||||||| Sbjct 15841128 TTTGTCAAGACCCTAACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGCGACACCATC 15841187 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 ||| | ||||| ||||| || || |||||||| |||||||| || ||||| ||| Sbjct 15841188 GAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAGCAGAGGCTG 15841247 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGA 24145 || | | |||||||| || ||||| Sbjct 15841248 ATCTTTGCAGGCAAGCAGCTGGAAGA 15841273 >seq76 Length=7797616 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | ||||| || | || ||| | || || ||| ||| Sbjct 4981037 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 4980978 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | ||||| ||||| || || |||||||| |||||||| || Sbjct 4980977 CGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCA 4980918 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| ||||| | | |||||||| || ||||| Sbjct 4980917 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGA 4980882 >seq49 Length=14824766 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| | || || || ||| | Sbjct 11086096 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAGC 11086155 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| || ||||||||||| |||||||| || Sbjct 11086156 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAG 11086215 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| ||||| | | |||||||| || ||||| Sbjct 11086216 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGA 11086250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429881395575255