Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq65 95.1 1e-14 seq67 89.7 4e-13 seq17 84.2 2e-11 >seq65 Length=10584338 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| | |||||||| || || || || || ||||| ||| |||| ||| || Sbjct 10480777 AAGATGCAGGTCTTTGTCAAGACCCTTACAGGCAAGACCATCACCCTCGAGGTTGAGCCC 10480836 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | |||||| ||| | ||||| ||||| | || | ||| Sbjct 10480837 TCGGATACGATAGAAAACGTAAAAGCCAAAGTCCAGGATAAGGAAGGAATTCCTCTGGAT 10480896 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| ||||| || | ||| ||| | ||| | | || || Sbjct 10480897 CAGCAAAGACTGATCTTTGCTGGCAAGCAGCTGGAATATGGCCGAACTTTATCGGACTAC 10480956 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| || ||||||||| | ||| ||||| ||||| | || || || Sbjct 10480957 AACATTCAGAAGGAGTCTACTCTGCATCTGGTGCTGAGACTCCGTGGTGG 10481006 >seq67 Length=9509266 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || |||||||| || || ||||| || ||||| ||| |||| ||| || Sbjct 6398156 ATGCAGATCTTTGTCAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTTGAGCCCTCG 6398215 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | | | ||| || ||||| ||||| ||||| | || |||||| Sbjct 6398216 GATACAATAGAAAATGTATAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCAGATCAG 6398275 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||||| || | ||| ||||| || | ||||||| | || | | ||||| ||| Sbjct 6398276 CAAAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAAGTTTATCTGATTACAAC 6398335 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTG 115504 ||||| || |||| ||| | || ||||| ||||| || Sbjct 6398336 ATTCAGAAGGAGTGCACTCTGCACCTGGTGCTGAGACTG 6398374 >seq17 Length=35549867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || ||||| || || || || || ||||| ||| | || | ||| || Sbjct 25102033 ATGCAGATCTTCGTCAAGACTCTTACAGGCAAGACCATCACCCTTGAGATTGAGCCCTCA 25101974 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | ||| |||||| ||||| || || |||||| | || |||||| Sbjct 25101973 GATACGATAGAACATGTAAAAGCCAAAATCCAGGAAAAGGAAGGCATTCCTCCGGATCAG 25101914 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||||| | | ||| ||||| || | ||||||| | || | | || || ||| Sbjct 25101913 CAAAGACTGACCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAAGTTTATCTGACTACAAC 25101854 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 |||| || ||||| ||| | ||| ||||| ||||| Sbjct 25101853 CTTCAGAAGGAGTCCACTCTGCATCTGGTGCTGAGA 25101818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425289978786520