Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq42 125 7e-24 seq40 122 8e-23 seq76 118 1e-21 seq6 113 4e-20 seq49 111 1e-19 seq17 109 5e-19 seq24 93.3 4e-14 >seq42 Length=18384968 Score = 125 bits (138), Expect = 7e-24 Identities = 169/234 (72%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| |||||| |||| || ||||| | || | || ||||| || || |||||||| Sbjct 13800131 ATGATGCCACCCCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAG 13800072 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 ||| || ||||| ||||| |||||||||| || |||| | ||||||||||||| Sbjct 13800071 TCGGACAGAGTGCGACCATCCTCCAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCC 13800012 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || ||||| || || ||||| ||| || ||||| | || | || ||| ||| | Sbjct 13800011 GGGGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTTTCGATGGTGTCGCTGGGC 13799952 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| ||| | ||| || || || || || |||||||| ||||||||| Sbjct 13799951 TCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCATG 13799898 >seq40 Length=19049039 Score = 122 bits (134), Expect = 8e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | | ||| || || | || | ||| |||||||| || |||||||| || Sbjct 15841347 AGCCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 15841288 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || |||||| ||| || |||||||||||||| |||| | | ||||||||| |||| Sbjct 15841287 ACAGGGTGCGGTTGTCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAG 15841228 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| ||||| || || ||| || ||||| | ||| | || ||| ||| ||||| Sbjct 15841227 GGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGA 15841168 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAA 131227 || | ||| | ||| || |||||||| || || || |||| Sbjct 15841167 CCTCCAGGGTGATGGTCTTGCCGGTTAGGGTCTTGACAAAAA 15841126 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 145670 TATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTA 145729 |||| |||||| || | ||||| ||||| || ||||||||||| || || ||||| || Sbjct 15941908 TATTCTACGATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCAAGGTTCTGCTGGTTG 15941849 Query 145730 CTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTC 145789 || || | ||| || | || |||||||||||||| || ||| |||||| ||| | | Sbjct 15941848 CTCTTGCGGTTACAAGAATCTTTGTAGAGCATGTAGGGGGTGCCTGTCTCCGTCTGAGAC 15941789 Query 145790 TCCACGATA 145798 || | |||| Sbjct 15941788 TCGATGATA 15941780 >seq76 Length=7797616 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || | || | ||| |||||||| || |||||||| || || |||||| | Sbjct 4980822 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCG 4980881 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || |||||||||||||| |||| | | ||||||||| |||||||| ||||| || Sbjct 4980882 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTA 4980941 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | || ||| ||| ||| | || | ||| | | Sbjct 4980942 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 4981001 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || || ||||| |||||||| Sbjct 4981002 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4981036 >seq6 Length=51880498 Score = 113 bits (124), Expect = 4e-20 Identities = 163/229 (71%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | | ||| || || | || | ||| |||||||| || |||||||| || Sbjct 47505287 AGCCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 47505228 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || |||||| || || |||||||||||||| |||| | | ||||||||| |||| Sbjct 47505227 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGAG 47505168 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| ||||| || | | ||| || ||||| | ||| | || ||| ||| || | Sbjct 47505167 GGATGCCTTCCTTACCTG-GATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGTTCCA 47505109 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 47505108 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 47505060 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | | |||||| | || | || |||||||| ||||||||||| || | | Sbjct 32416407 CCACCACGGAGTCTCAGCACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAT 32416348 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | | || | || || ||||||||||| || |||| || | ||||| |||||||| Sbjct 32416347 GAAGTTTGGCCA-TCTTCCAGCTGCTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGG 32416289 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| || || | |||| || | | || | ||||| | || ||| Sbjct 32416288 AATTCCTTCCTTATCCTGGGTTTTGGCTTTTACATTTTCTATCGTATCCGAGGGCTCTTC 32416229 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || |||||||| |||||||| Sbjct 32416228 CTCTAGGGTGATGGTCTTGCCCGTAAGGGTCTTTACGAAGATCTGCAT 32416181 >seq49 Length=14824766 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || |||||||| || || |||||| ||| || ||||||||||| Sbjct 11086293 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCC 11086234 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | | ||||||||| |||||||| |||||||| || ||| || ||| Sbjct 11086233 TGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTT 11086174 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | || | || ||| ||| || | || | ||| | ||| || || || || || Sbjct 11086173 GACATTTTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 11086114 Query 131217 TTTTACGAAAATCTGCATG 131235 || ||||| ||||||||| Sbjct 11086113 CTTCACGAAGATCTGCATG 11086095 >seq17 Length=35549867 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | | ||| || || | || | ||| ||||||||||| |||||||| || Sbjct 30593120 AGCCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCAG 30593061 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || |||||| || || |||||||||||||| |||| | | || |||||| |||| Sbjct 30593060 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTTCTGGTCGGGAG 30593001 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| ||||| || || ||| || ||||| | ||| | || ||| || ||| | Sbjct 30593000 GGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGTGCTCAA 30592941 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || | ||| || || || || || ||||||||| Sbjct 30592940 CCTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCACAAAGATCTGCATG 30592891 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGT 131080 |||||| | ||| | || |||||||| |||| |||||| || | | | | || | | Sbjct 25101821 CAGCACCAGATGCAGAGTGGACTCCTTCTGAAGGTTGTAGTCAGATAAACTTCGGCCA-T 25101879 Query 131081 CCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGT 131140 | || ||||||||||| || || | | | ||||| |||||||| || ||||| || | Sbjct 25101880 CTTCCAGCTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCCGGAGGAATGCCTTCCTTTT 25101939 Query 131141 CGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGG 131200 | |||||| || | || || | ||||| | || ||| || || | ||| | || Sbjct 25101940 CCTGGATTTTGGCTTTTACATGTTCTATCGTATCTGAGGGCTCAATCTCAAGGGTGATGG 25101999 Query 131201 TTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || || || ||||| || ||||| |||||||| Sbjct 25102000 TCTTGCCTGTAAGAGTCTTGACGAAGATCTGCAT 25102033 >seq24 Length=26830293 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || | || | ||| |||||||| || |||||||| || || |||| | Sbjct 11934357 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGTGGCCA 11934298 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || |||||||||||||| |||| | | |||||| || |||||||| ||||| || Sbjct 11934297 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGTTCGGGAGGGATGCCTTCCTTA 11934238 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | || || ||| ||| | || | ||| | | Sbjct 11934237 TCCTGGATCTTGGCCTTGACATTCTCGA-TGTTTCATTGGGCTCCACCTCCAGGGTGATG 11934179 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || || || || || || || || || ||||||||| Sbjct 11934178 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 11934143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471951314432640