Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq76 114 1e-20 seq42 107 2e-18 seq6 107 2e-18 seq49 104 2e-17 seq40 102 7e-17 seq17 102 7e-17 >seq76 Length=7797616 Score = 114 bits (126), Expect = 1e-20 Identities = 156/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || ||||||||||| | || ||| | |||| Sbjct 4980824 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTC 4980883 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| ||| | ||| || || || Sbjct 4980884 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATC 4980943 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||||| ||||||| |||| ||||||| Sbjct 4980944 CTGGATCTTGGC--CTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 4981001 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || || ||||| || || || || ||||||||| Sbjct 4981002 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 4981037 >seq42 Length=18384968 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||||||||||| || || ||||||||||||| || || | ||| Sbjct 13800110 AGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCC 13800051 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGT-C 16842 |||| || |||| ||| | || || ||||| |||||| || | |||||| |||| | Sbjct 13800050 TCCAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 13799991 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 | | ||| | ||| || | | | ||||||| ||||||| || | ||||||||| Sbjct 13799990 TGGATCTTGGT-CTTGACGTTTTCGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGT 13799932 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || || || || |||||||| Sbjct 13799931 CTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 13799899 >seq6 Length=51880498 Score = 107 bits (118), Expect = 2e-18 Identities = 154/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| ||||||||||| || ||||||||||| | || ||| | | || Sbjct 47505270 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 47505211 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || ||||| ||| | || |||| ||| ||||| ||| | ||| || || | Sbjct 47505210 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTACCT 47505151 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 | | ||| ||| || | | | ||||||| ||| ||| |||| ||||||||| Sbjct 47505150 GGATCTTG-GCCTTGACATTCTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTC 47505092 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || |||||||| || || || || |||||||| ||| Sbjct 47505091 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATCTTG 47505056 >seq49 Length=14824766 Score = 104 bits (114), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||| | || ||| |||| |||| || Sbjct 11086298 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGC 11086239 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| ||| ||||| ||| | ||| ||||| || || || Sbjct 11086238 TTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTG 11086179 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | ||||||| ||| ||| |||| ||||||||| || || | Sbjct 11086178 GC--CTTGACATTTTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAG 11086121 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || |||||||| Sbjct 11086120 TCAGGGTCTTCACGAAGATCTGCAT 11086096 >seq40 Length=19049039 Score = 102 bits (112), Expect = 7e-17 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| ||||||||||| || ||||||||||| | || ||| | ||| Sbjct 15841330 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGTTGTCT 15841271 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || |||| ||| ||||| ||| | ||| || || || Sbjct 15841270 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCC 15841211 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||||| |||||| |||| |||||||| Sbjct 15841210 TGGATCTTGGC--CTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGG 15841153 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAA 16928 | || ||||| || || |||||||||| Sbjct 15841152 TCTTGCCGGTTAGGGTCTTGACAAAAA 15841126 >seq17 Length=35549867 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||||||||| ||||||||||| | || ||| | | || Sbjct 30593103 AGGACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 30593044 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || |||| || ||||| ||| | ||| || || || Sbjct 30593043 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTTCTGGTCGGGAGGGATGCCTTCCTTATCC 30592984 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||||| | |||| |||| |||||||| Sbjct 30592983 TGGATCTTGGC--CTTGACATTCTCGATGGTGTCGCTGTGCTCAACCTCCAGGGTGATGG 30592926 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || | |||||| || || ||||| |||||||| Sbjct 30592925 TCTTGCTGGTCAGGGTCTTCACAAAGATCTGCAT 30592892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405036551418790