Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq26 96.9 2e-15 seq132 95.1 8e-15 seq136 89.7 3e-13 seq2 87.8 1e-12 seq19 82.4 5e-11 >seq26 Length=25362064 Score = 96.9 bits (106), Expect = 2e-15 Identities = 74/88 (84%), Gaps = 5/88 (6%) Strand=Plus/Plus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963 |||||| |||||||||||| || |||||||| ||||| || |||||| || ||| Sbjct 4900007 TTCCCTGGGCTGTGGTTTCCCTGGATAGTAGGTAGGGACAGTGGGAATCTCATTCATCTA 4900066 Query 25964 TTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||||||||||||||||| Sbjct 4900067 TTCATGCGCGTCACTAATTAGATGACGA 4900094 >seq132 Length=2374237 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| |||| ||| ||| Sbjct 1638708 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTTGACTATAGGTGTCGT 1638649 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 1638648 GCTGGTATTTAGCCTTA 1638632 >seq136 Length=2036769 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| || |||||||| Sbjct 1805227 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTGTCGGTCTCAT 1805286 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||| Sbjct 1805287 GCCGGTGTTTAGCCTTA 1805303 >seq2 Length=73975804 Score = 87.8 bits (96), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||| |||| ||||||| Sbjct 10395436 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCT--TGGTACTTGTTGACTATTGGTCTCGT 10395493 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 10395494 GCCGGTATTTAGCCTTA 10395510 >seq19 Length=29527457 Score = 82.4 bits (90), Expect = 5e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || || ||||| || || || || || ||||| |||||||| ||| || || Sbjct 1159440 CCCACCAAGTACTTCGGCTGTGAGCTGGGAGCGCAGACCCAGTTTGACGTCAAGAATGAC 1159381 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| ||| || |||||||| || | | ||||||||||||| | || || || || Sbjct 1159380 CGCTACATTGTCAACGGATCTCACGAGGCCAACAAGCTGCAGGACATGCTCGATGGATTC 1159321 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 ||| |||||||| || || | || || || || || || || || || Sbjct 1159320 ATTAAAAAGTTTGTTCTCTGCCCCGAGTGTGAGAATCCCGAAACAGATCT 1159271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334904659716851