Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq9 111 2e-19 seq40 109 7e-19 seq14 86.0 8e-12 >seq9 Length=49469770 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 15784990 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATCAGACCTCTCTTCTTC 15785049 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 15785050 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 15785108 >seq40 Length=19049039 Score = 109 bits (120), Expect = 7e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| ||||||||||| || | || ||||| || | | Sbjct 15940739 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTTGCGCG 15940680 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||||| || |||||||| ||||| || | ||| |||||| | | ||||| ||||||| Sbjct 15940679 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATATCTAAATGCCA 15940620 Query 63187 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63219 || |||| ||| || || | ||||||| || Sbjct 15940619 AGGCTCCAGGTAAATAGCAAATGCTCCAGGACG 15940587 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 15950533 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATC 15950474 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| || |||||||| || || |||||||| || || | | ||| Sbjct 15950473 GACTCATTATTCCCCAGGATCTGAGCAGTGGAGGCGGTCGGCATTGGGGCAATAAGCAAA 15950414 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 15950413 CTGTTTCTTATACCATA 15950397 Score = 102 bits (112), Expect = 1e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 63812 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 63871 || || | ||| |||||||||||||| | || || || || || || || || || ||| Sbjct 15930971 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACAGCAATCCTTGCTGCCAGGATG 15930912 Query 63872 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 63931 |||||||| || || | ||||| | || || || |||| || |||| || |||||| Sbjct 15930911 GCATAATCGGGGTGCTTCGTAGTCAAGGTTGCAGCAGTTTCAGCAGCCAACGTATCCAAT 15930852 Query 63932 TCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||||| || || || ||| | |||| |||||||| || ||||| Sbjct 15930851 TCTACTGTGGTGACTCCACTGTATAAGCCTTGGATTACTTTCAT 15930808 >seq14 Length=40210847 Score = 86.0 bits (94), Expect = 8e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 || |||| || || || || | || || |||||||| ||||| |||||||| ||||| Sbjct 6354256 TCCTTAATGTAAGTGTCGATAAGCAGGCTGTACATTTCTGAATGTATGTTTTCCATGGCA 6354197 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||| || ||||||||||| | || ||||| ||||| |||||| Sbjct 6354196 ATTTGGAAGCCGTAGAAGCAGCGGGCTTCGGTGATCTGAACTTCT 6354152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633549461511600