Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq42 104 2e-17 seq67 87.8 2e-12 >seq42 Length=18384968 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| ||| | Sbjct 13799899 ATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCCAGC 13799958 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| || || || || || Sbjct 13799959 GACACCATCGAAAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 13800018 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || |||||| |||| ||| | |||||| ||||| | ||||| |||||| Sbjct 13800019 CAGCGTCTCATCTTTGCCAGCAAGCAGCTGGAGGATGGTCGCACTCTGTCCGACTACAAC 13800078 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||| ||||| Sbjct 13800079 ATCCAGAAAGAGTCCAC 13800095 >seq67 Length=9509266 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || || || |||| || || || || || | Sbjct 6398155 GATGCAGATCTTTGTCAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTTGAGCCCTC 6398214 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | || ||||| || || ||||| || ||||| || ||||| Sbjct 6398215 GGATACAATAGAAAATGTATAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCAGATCA 6398274 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || ||||| ||||| ||| | || ||| ||| | | || |||||||| Sbjct 6398275 GCAAAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAAGTTTATCTGATTACAA 6398334 Query 22398 CATTCAAAAAGAATCCAC 22415 |||||| || || | ||| Sbjct 6398335 CATTCAGAAGGAGTGCAC 6398352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419674692051865