Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq42 113 4e-20 seq49 91.5 1e-13 seq6 86.0 5e-12 seq65 82.4 6e-11 >seq42 Length=18384968 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || ||||| || |||||||| ||| || ||| ||| ||| || || || || | Sbjct 13800096 CGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCCTCCAGCTGCTTGCT 13800037 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 || ||||||||||||| |||||||| || ||||| || ||||| ||||| || Sbjct 13800036 GGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGTCTT 13799977 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | ||| | ||||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 13799976 GACGTTTTCGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGT 13799917 Query 114365 TTTTACAAAAATCTGCATGG 114384 ||||| || |||||||||| Sbjct 13799916 CTTTACGAAGATCTGCATGG 13799897 >seq49 Length=14824766 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || ||||| || || || || Sbjct 11086292 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCT 11086233 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| ||||| ||||||||||| || ||||| || Sbjct 11086232 GCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTG 11086173 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | ||||||| ||| ||| || |||| ||| | || ||||| ||||| || Sbjct 11086172 ACATTTTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 11086113 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 11086112 TTCACGAAGATCTGCATG 11086095 >seq6 Length=51880498 Score = 86.0 bits (94), Expect = 5e-12 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || |||||| || || || || Sbjct 47505255 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 47505196 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| ||||| |||||||| || | | | |||| || Sbjct 47505195 GCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTACCTGGA-TCTTGGCCTTG 47505137 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| ||| ||| || |||| ||| | || ||||||||||| || Sbjct 47505136 ACATTCTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 47505077 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 47505076 TTCACGAAGATCTGCAT 47505060 >seq65 Length=10584338 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| ||||||| || | ||| | ||||| || || ||||||||||| || Sbjct 10481007 ACCACCACGGAGTCTCAGCACCAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 10480948 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| || || ||| || || || ||||| |||| || | || || ||| |||| Sbjct 10480947 TAAAGTTCGGCCATATTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCCAGAGG 10480888 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTG-TTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 ||| ||||| || || | |||| | ||||| | ||| | || || | || || | Sbjct 10480887 AATTCCTTCCTTATCCTGGA-CTTTGGCTTTTACGTTTTCTATCGTATCCGAGGGCTCAA 10480829 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | ||| | || ||||| || || || || ||||| | |||||| Sbjct 10480828 CCTCGAGGGTGATGGTCTTGCCTGTAAGGGTCTTGACAAAGACCTGCAT 10480780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420081040436652