Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq14 114 2e-20 seq9 102 2e-16 >seq14 Length=40210847 Score = 114 bits (126), Expect = 2e-20 Identities = 102/125 (82%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 |||||||| | || || || ||||| |||||||| ||| ||||||| |||||||||||| Sbjct 6356484 GTAGCCTTCGCTGCGGTGGAAGGCATTTTCTTCTCCGGCTCCTTCGCGTCCATCTTCTGG 6356543 Query 42768 CTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| || ||| | |||||| || ||||| ||||| || |||||||| |||||||| Sbjct 6356544 CTCAAGAAGCGAGGCCT-GATGCCTGGGCTCACTTTCTCCAATGAACTCATTAGCAGGGA 6356602 Query 42827 CGAGG 42831 |||| Sbjct 6356603 TGAGG 6356607 >seq9 Length=49469770 Score = 102 bits (112), Expect = 2e-16 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || |||||| |||| |||||| | || || || || || ||||||||||| | || || Sbjct 15785123 GGGGAGAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 15785064 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || |||||||| ||| ||| |||| | |||||| |||||||| || || || ||||| Sbjct 15785063 GCTATATTCTGGCTGAAGAAGAGAGGTCT-GATGCCTGGACTCACTTTTTCCAATGAACT 15785005 Query 42815 CATCAGCAGGGACGA 42829 ||||||||| || || Sbjct 15785004 CATCAGCAGAGATGA 15784990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944216188014960