Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq6 113 4e-20 >seq6 Length=51880498 Score = 113 bits (124), Expect = 4e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || ||||| ||||| |||| ||| || || | |||| |||||||||||||| || || Sbjct 43802740 AGTCCAGTGACATGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 43802681 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || |||| |||||||||||||||||||| |||| ||| ||||| ||||| |||| || Sbjct 43802680 ACGCCCAGGCCCATGTCTCCCGACCTCTGGTACAACTGGCAGGACAGCTCGCCGTTCACT 43802621 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATC 20398 || || || || || | || || || || || |||||| Sbjct 43802620 ACGTAGAACTGGCAGAGAGCATGGCATGGGGGCAGGGCCATC 43802579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441315305675640