Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq67 86.0 5e-12 seq26 84.2 2e-11 >seq67 Length=9509266 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33909 CAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCG 33968 ||| | ||||||||| || || |||| ||||||||||||||||||||| | || ||| Sbjct 6398374 CAGTCTCAGCACCAGGTGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGATAAACTTCG 6398315 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || |||| |||||||| ||||| ||||| | |||||||| Sbjct 6398314 GCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATC 6398270 >seq26 Length=25362064 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| ||||| ||||| || || ||| || |||||| |||||||| || | Sbjct 23898039 ACCTCCCCTCAAGCGCAGGACCAGGTGCAGGGTGGACTTCTTCTGGATGTTGTAGTCAGA 23897980 Query 33960 CAAT-TGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| ||| || | || |||| |||||||||||||| ||||| | |||||| || Sbjct 23897979 CAAGGTGTGGC-CATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTC 23897926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397011970717642