Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq49 138 3e-27 seq76 122 2e-22 seq65 113 1e-19 seq17 107 5e-18 seq67 102 2e-16 seq40 98.7 2e-15 seq24 95.1 3e-14 seq3 93.3 1e-13 >seq49 Length=14824766 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || |||||||||||||| | || || ||||| ||| Sbjct 11086286 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCTGCAAAG 11086227 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || ||||| ||||||||||||||||| || || || || ||| Sbjct 11086226 ATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTGACATTT 11086167 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | ||| || || || ||||| ||||| || ||||| ||||| ||| Sbjct 11086166 TCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 11086107 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 11086106 AAGATCTGCAT 11086096 >seq76 Length=7797616 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| |||||||| | || || ||||| ||| Sbjct 4980846 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCCAGCTGCTTGCCTGCAAAG 4980905 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || ||||| ||||| ||||||||||| || || || || || Sbjct 4980906 ATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTC 4980965 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | || || || || ||||| ||||| || ||||| ||||| ||| Sbjct 4980966 TCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 4981025 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 4981026 AAGATCTGCATT 4981037 >seq65 Length=10584338 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| || || ||||| | || || || || || || ||||| | Sbjct 10481006 CCACCACGGAGTCTCAGCACCAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAT 10480947 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || | ||| | || || || || |||||||| | || ||| || Sbjct 10480946 AAAGTTCGGCCATATTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCCAGAGGA 10480887 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| |||||||||| ||| ||||| ||||||||||| | ||| | || || Sbjct 10480886 ATTCCTTCCTTATCCTGGACTTTGGCTTTTACGTTTTCTATCGTATCCGAGGGCTCAACC 10480827 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || || |||||||| || | |||||| Sbjct 10480826 TCGAGGGTGATGGTCTTGCCTGTAAGGGTCTTGACAAAGACCTGCAT 10480780 >seq17 Length=35549867 Score = 107 bits (118), Expect = 5e-18 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 30593082 TCCTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 30593023 Query 288343 ATCAGACGCT----GTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | || || | || ||||| ||||| ||||||||||| || || || || Sbjct 30593022 ATCAGCCTCTTCTGGTCGGGA----GGGATGCCTTCCTTATCCTGGATCTTGGCCTTGAC 30592967 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | ||||| || || || || ||||| ||||| | |||||| ||||| Sbjct 30592966 ATTCTCGATGGTGTCGCTGTGCTCAACCTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTT 30592907 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 30592906 CACAAAGATCTGCAT 30592892 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || || ||||| | ||| || || || | || ||||| | Sbjct 25101807 CCACCATGGAGTCTCAGCACCAGATGCAGAGTGGACTCCTTCTGAAGGTTGTAGTCAGAT 25101866 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | | || || ||||| | || || || || ||| |||| | || ||| || Sbjct 25101867 AAACTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCCGGAGGA 25101926 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||||||||| ||||| || | |||||| | ||| | || | Sbjct 25101927 ATGCCTTCCTTTTCCTGGATTTTGGCTTTTACATGTTCTATCGTATCTGAGGGCTCAATC 25101986 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || ||||| ||||| || || |||||||||||||| |||||||| ||| Sbjct 25101987 TCAAGGGTGATGGTCTTGCCTGTAAGAGTCTTGACGAAGATCTGCATCATG 25102037 >seq67 Length=9509266 Score = 102 bits (112), Expect = 2e-16 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| || || || || | |||| || || || || || || || | | | || Sbjct 6398373 AGTCTCAGCACCAGGTGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGATAAACTTCGG 6398314 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372 || ||||| | || || || || |||||||| | || ||| ||||| |||||| Sbjct 6398313 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGA---TCTGGAGGAATTCCT 6398257 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || |||||||||||||| |||| || |||||||| | ||| | || || ||||| Sbjct 6398256 TCCTTATCCTGGATTTTGGCTTATACATTTTCTATTGTATCCGAGGGCTCAACCTCGAGG 6398197 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || || |||||||| || |||||||| Sbjct 6398196 GTGATGGTCTTGCCCGTAAGGGTCTTGACAAAGATCTGCAT 6398156 >seq40 Length=19049039 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| |||||| | || || ||||| ||| Sbjct 15841309 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGTTGTCTTCCAGCTGCTTGCCTGCAAAG 15841250 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || ||||| ||||| ||||||||||| || || || || || Sbjct 15841249 ATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTC 15841190 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | || || || || ||||| ||||| ||||| || |||||||| Sbjct 15841189 TCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCGGTTAGGGTCTTGACA 15841130 Query 288463 AA 288464 || Sbjct 15841129 AA 15841128 >seq24 Length=26830293 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/194 (72%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||| | || ||||| | || || ||||| ||| Sbjct 11934333 TCCTTCTGGATGTTGTAGTCAGACAGGGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAG 11934274 Query 288343 ATCAGAC---GCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | |||||| | | ||||| ||||| ||||||||||| || || || || Sbjct 11934273 ATCAGCCTCTGCTGTTCGGGA---GGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACA 11934217 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | | || || || || ||||| ||||| || ||||| ||||| Sbjct 11934216 TTCTCGAT-GTTTCATTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 11934158 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 11934157 ACAAAGATCTGCAT 11934144 >seq3 Length=63406555 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||| | | || || || |||| | | || | ||||| ||| Sbjct 63015619 TCTTTCTGGATGTTGTAGACAGACAGGGTACGGTTGTCTCCCAGCTGCCTGCCTGCAAAG 63015678 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || | ||||| ||||| ||||||||||| ||||| || || || Sbjct 63015679 ATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTCGCCTTGACATTC 63015738 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||||| | ||||| | | || || | ||| | ||||| ||||||| ||||| ||| Sbjct 63015739 TCTATGGTGTCGCTGGGCTTGACCTCCGGGGTGGTGGTCTTGCCGGTCAAGGTCTTCACG 63015798 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 63015799 AAGATCTGCAT 63015809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179496893650438