Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq76 123 2e-23 seq49 122 9e-23 seq6 111 2e-19 seq42 107 2e-18 seq40 104 2e-17 seq24 104 2e-17 seq17 104 2e-17 seq67 96.9 3e-15 seq3 86.0 6e-12 seq65 84.2 2e-11 seq58 84.2 2e-11 >seq76 Length=7797616 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||||| ||||||| ||||||||||| Sbjct 4980840 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCCAGCTGCTTGCCT 4980899 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||||||||| || ||||| || || || || || ||| Sbjct 4980900 GCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTG 4980959 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | || ||||| || | || | ||||||||| |||| || Sbjct 4980960 ACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 4981019 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||| || |||||| Sbjct 4981020 TTCACGAAGATCTGCATT 4981037 >seq49 Length=14824766 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||||| ||||||| ||||||||||| Sbjct 11086292 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCT 11086233 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||||||||| || |||||||| || || || || ||| Sbjct 11086232 GCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTG 11086173 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | || ||||| || | || | ||||||||| |||| || Sbjct 11086172 ACATTTTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 11086113 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 11086112 TTCACGAAGATCTGCAT 11086096 >seq6 Length=51880498 Score = 111 bits (122), Expect = 2e-19 Identities = 147/203 (72%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||||| | ||||| ||||||||||| Sbjct 47505255 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 47505196 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| ||||| || ||||| || | || || || ||| Sbjct 47505195 GCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTC-CTTACCTGGATCTTGGCCTTG 47505137 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | || ||||| || | || | |||||||||||||| || Sbjct 47505136 ACATTCTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 47505077 Query 64427 TTTACGAAAATTTGCATTTTAAT 64449 || ||||| || ||||| || || Sbjct 47505076 TTCACGAAGATCTGCATCTTGAT 47505054 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| ||||| || || | || || || || ||||||||||| || | Sbjct 32416408 ACCACCACGGAGTCTCAGCACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA 32416349 Query 64276 -GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334 || | | || | ||||| ||||||||||| ||| | || | | ||||| || |||| Sbjct 32416348 TGAAGTTTGGC-CATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAG 32416290 Query 64335 GAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||||| || || || |||| |||||| || | ||||| || || Sbjct 32416289 GAATTCCTTCCTTATCCTGGGTTTTGGCTTTTACATTTTCTATCGTATCCGAGGGCTCTT 32416230 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | |||| || | ||||||||| || | || |||||||| || ||||| Sbjct 32416229 CCTCTAGGGTGATGGTCTTGCCCGTAAGGGTCTTTACGAAGATCTGCAT 32416181 >seq42 Length=18384968 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||| || ||||| || |||||||| || | | ||||| | || Sbjct 13800110 AGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCC 13800051 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||| |||| | ||||| ||||||||||| || || || || || || || Sbjct 13800050 TCCAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 13799991 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || | || ||||| || | || | |||| Sbjct 13799990 TGGATCTTGGTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTC 13799931 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || |||||||| || ||||| Sbjct 13799930 TTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 13799899 >seq40 Length=19049039 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||||| |||||| ||||||||||| Sbjct 15841315 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGTTGTCTTCCAGCTGCTTGCCT 15841256 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||||||||| || ||||| || || || || || ||| Sbjct 15841255 GCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTG 15841196 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | || || || || | || | |||||||||||| | || Sbjct 15841195 ACATTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCGGTTAGGGTC 15841136 Query 64427 TTTACGAAAA 64436 || || |||| Sbjct 15841135 TTGACAAAAA 15841126 >seq24 Length=26830293 Score = 104 bits (114), Expect = 2e-17 Identities = 142/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||| | | ||||| ||||||||||| Sbjct 11934339 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGTGGCCATCTTCCAGCTGCTTGCCT 11934280 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||| |||||||| || ||||| || || || || || ||| Sbjct 11934279 GCAAAGATCAGCCTCTGCTGTTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTG 11934220 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||| ||| || ||||| || | || | ||||||||| |||| || Sbjct 11934219 ACATTCTCGA-TGTTTCATTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 11934161 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 11934160 TTCACAAAGATCTGCAT 11934144 >seq17 Length=35549867 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| |||||||| || | | |||||| | ||||| ||||||||||| Sbjct 30593088 GTGGACTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 30593029 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| || |||||||||||| || ||||| || || || || || ||| Sbjct 30593028 GCAAAGATCAGCCTCTTCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTG 30592969 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | | || || || | || | |||||||| ||||| || Sbjct 30592968 ACATTCTCGATGGTGTCGCTGTGCTCAACCTCCAGGGTGATGGTCTTGCTGGTCAGGGTC 30592909 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 30592908 TTCACAAAGATCTGCAT 30592892 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| ||||| ||||| | || || || || |||| |||||| || | | | || | Sbjct 25101818 TCTCAGCACCAGATGCAGAGTGGACTCCTTCTGAAGGTTGTAGTCAGATAAACTTCGGCC 25101877 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| ||||||||||| ||| | | || | ||||| || |||||||| ||||| || Sbjct 25101878 ATCTTCCAGCTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCCGGAGGAATGCCTTCCTT 25101937 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||| || ||||| |||||| || | ||||| || || | || | || | Sbjct 25101938 TTCCTGGATTTTGGCTTTTACATGTTCTATCGTATCTGAGGGCTCAATCTCAAGGGTGAT 25101997 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||| || | ||| || ||||| || ||||| Sbjct 25101998 GGTCTTGCCTGTAAGAGTCTTGACGAAGATCTGCAT 25102033 >seq67 Length=9509266 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 64225 CAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCG 64284 || ||| ||||| || || | || | || || |||||||||||||| | | | || Sbjct 6398374 CAGTCTCAGCACCAGGTGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGATAAACTTCG 6398315 Query 64285 CGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTC 64344 | ||||| ||||||||||| ||| | || || | ||||| || |||||||||||||| Sbjct 6398314 GCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCTGGAGGAATTCCTTC 6398255 Query 64345 TTTTTCTTGTATTTTTTGCTT-TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAG 64403 || || || | |||| |||| |||| || | |||||| || || || || | | Sbjct 6398254 CTTATCCTGGA-TTTTGGCTTATACATTTTCTATTGTATCCGAGGGCTCAACCTCGAGGG 6398196 Query 64404 TTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | | ||||||||| || | || || || || || ||||| Sbjct 6398195 TGATGGTCTTGCCCGTAAGGGTCTTGACAAAGATCTGCAT 6398156 >seq3 Length=63406555 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| | | | ||| || |||| | |||||| |||| Sbjct 63015613 GTGGACTCTTTCTGGATGTTGTAGACAGACAGGGTACGGTTGTCTCCCAGCTGCCTGCCT 63015672 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || ||||||||| ||||| || ||||| || || || || || ||| Sbjct 63015673 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTCGCCTTG 63015732 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | || | || || || ||||||||||||||| || Sbjct 63015733 ACATTCTCTATGGTGTCGCTGGGCTTGACCTCCGGGGTGGTGGTCTTGCCGGTCAAGGTC 63015792 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 63015793 TTCACGAAGATCTGCAT 63015809 >seq65 Length=10584338 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| ||||| ||||| | || || || || ||||||||||| || | Sbjct 10481007 ACCACCACGGAGTCTCAGCACCAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 10480948 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | | ||| ||||||||||| ||| | || || | ||||| || |||| Sbjct 10480947 TAAAGTTCGGCCATATTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCCAGAGG 10480888 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || | ||| ||||| || | ||||| || || || Sbjct 10480887 AATTCCTTCCTTATCCTGGACTTTGGCTTTTACGTTTTCTATCGTATCCGAGGGCTCAAC 10480828 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||||||| || | || || || || | ||||| || Sbjct 10480827 CTCGAGGGTGATGGTCTTGCCTGTAAGGGTCTTGACAAAGACCTGCATCTT 10480777 >seq58 Length=12492363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 64220 CCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG 64279 ||||||| | || || || || | || || || || || |||||||| || | | | Sbjct 9398031 CCGCGCAGGCGCAGGACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGG 9398090 Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATT 64339 ||||| | ||||| || | |||||| ||| | || |||| ||||||||||||||| || Sbjct 9398091 GTGCGGCCATCTTCCAGTTCCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATG 9398150 Query 64340 CCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGG 64388 ||||| || || || || || ||| ||| ||| | || |||| || Sbjct 9398151 CCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGG 9398199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499579715019240