Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq42 129 6e-25 seq6 82.4 7e-11 >seq42 Length=18384968 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||| |||||||| || || ||||| ||| | Sbjct 13800125 CCACCCCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGAC 13800066 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || | || |||| | |||||||| || || || Sbjct 13800065 AGAGTGCGACCATCCTCCAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGG 13800006 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | ||||| |||||| | ||| || Sbjct 13800005 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCACC 13799946 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| ||| | || ||||| ||||| || ||||| || |||||||||| Sbjct 13799945 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCATGG 13799897 >seq6 Length=51880498 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || ||||| || || Sbjct 47505255 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 47505196 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || ||||| ||||| ||||| | | ||| || |||| Sbjct 47505195 GCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTACCTG-GATCTTGGCCTTG 47505137 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | || || || | ||| | || ||||||||||| || Sbjct 47505136 ACATTCTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 47505077 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 47505076 TTCACGAAGATCTGCAT 47505060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475438860077040