Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq4 190 3e-43 >seq4 Length=59374630 Score = 190 bits (210), Expect = 3e-43 Identities = 213/285 (75%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| |||||||||||| || |||||| |||||||| || || || || || Sbjct 56649816 AAGGGACAGCCCTTCACATTGTTGCAGATGAGGCTCTGAATGGAGGCAGTGTTGACAATT 56649757 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | || || || || || || || ||||| || |||||||| ||||| ||||| Sbjct 56649756 TTGAAGCCCACTTCTCCACCAAACGTGCTTGGCTTCCAGTAGTTAGGGGAACAGATAGGA 56649697 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || ||||||| ||||||| ||| || |||||||||| || | ||| |||| || ||| Sbjct 56649696 TTACCCATGAGGCCTTTCAGGGAGAATGGAGCCCCCATTTCTACCATGGTCTCCCCAAAG 56649637 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 ||||| | ||||| ||| |||| || | | | ||| ||| || || || || || | | Sbjct 56649636 ATGGCGTCTGGACGAGGTCTTTCCACCAGAAGGGCAGGGTACAGCTCCACTGCATCAATG 56649577 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||||||||||| ||||||||||| ||||| ||||||||||| ||| Sbjct 56649576 TCGCCATAGAGCGCTTCCAACTCCGCAGCCATCTCCTTCTCTCCT 56649532 Score = 149 bits (164), Expect = 9e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || || ||||||||||| ||||||| || || || || ||||| || ||||| || Sbjct 56648179 GTCTGGAATAACTGCTCGTCGTCCCATTCGGGATGCTCCTGCTTGAGCACGTCGCACACT 56648120 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 | ||| || || | | ||| || |||||||||||||| | || ||||| | ||||||| Sbjct 56648119 CGGTTATGCTCCCGTAACCAGATTGTGGCGTACATCATCAGGCCAGGCACCAGACCAAAC 56648060 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 ||||| | ||||| || |||||||| | || || || | ||||| || | ||| | | Sbjct 56648059 ACTTCCTGGCCCACAGCGAAGCGCAGCTGCTCAGGGACGTGGGGCGGGTAGAACATCTCC 56648000 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 |||| || ||| |||| ||||| || |||| ||| || || || ||||| Sbjct 56647999 GCCTGTGTGTCTCTGACTGTGGGAGGGTACACTTCTCCATCGATGACCTG 56647950 Score = 127 bits (140), Expect = 3e-24 Identities = 211/302 (70%), Gaps = 2/302 (1%) Strand=Plus/Minus Query 9422 CACCACTAATCCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGT 9481 || |||| | || || || ||||| | ||||| || | || || || | | ||||| Sbjct 56648787 CAACACTCACCCTGCCAGCTATCTGCTTGGTGAATGACTGGACAAACTGCGTAAGTCCGT 56648728 Query 9482 GCTTGATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTA 9541 ||| | |||||||| |||||||| | || |||| || |||||| ||| | | Sbjct 56648727 GCTCCAGCAGGATGGAGTTGTTGTAGAGAAACTGTTGATAGTTGTACTTCTGGTCATCAA 56648668 Query 9542 TGCGAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTA 9601 || |||| |||| |||| || | ||||||| | ||||| || |||||||| | || | Sbjct 56648667 TGTGAAAGGCATCGGGCAGGAGTGGATGCCAGTGATAGAGTGTGTTGAACTCAGAGGCAA 56648608 Query 9602 TTCGGTTCTGGTACT-GAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGG 9660 | ||||||||||||| ||| || | | ||| || | ||| |||||||| |||| | | Sbjct 56648607 TCCGGTTCTGGTACTGGAACTGCTG-GCTGAAAAGCAGCTCTGGGTCAAACTTTAGTTTG 56648549 Query 9661 AAGTGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCG 9720 ||||| || ||||| | ||||| || || | | || | ||| || ||||| || || Sbjct 56648548 AAGTGATAGCCGCTCAAGTGCTGCACGTAGTCTTCAATCACAATCTTGATGGTCTCTCCT 56648489 Query 9721 GT 9722 || Sbjct 56648488 GT 56648487 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| ||||| |||| | || || ||||||| || || |||||| ||| | Sbjct 56645715 CTTACGCGTCGAGCAGTTTTCTCCGTAGAATCCCGTCCTGGTGCAGTCGCACTTATACTG 56645656 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 |||||||||| ||||| || || ||| | || || || |||| |||||||||||||| Sbjct 56645655 GTCAAACCCCATGGTCATACACACGCCTTGGTTTTGACATGGGTTGGAACAGCAAGGGTT 56645596 Query 10960 GGCTGCAA 10967 |||||||| Sbjct 56645595 GGCTGCAA 56645588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723633725381400