Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq49 136 9e-27 seq6 131 4e-25 seq42 129 1e-24 seq17 129 1e-24 seq76 127 5e-24 seq40 118 2e-21 seq24 114 3e-20 seq67 113 1e-19 seq65 111 4e-19 seq26 100 7e-16 seq58 96.9 8e-15 seq78 91.5 3e-13 seq8 86.0 1e-11 >seq49 Length=14824766 Score = 136 bits (150), Expect = 9e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 || |||| || || |||||||| |||| ||||||||||| || || | ||| ||||||| Sbjct 11086303 CAGGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCA 11086244 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 ||||||| || || ||||| || | ||||||||| ||| || |||||| ||||| | Sbjct 11086243 GCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGA 11086184 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||| || ||||| |||||| | | ||| || |||| ||||| ||||| | Sbjct 11086183 TCTTGGCCTTGACATTTTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGC 11086124 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 | || || || ||||| || || || Sbjct 11086123 CAGTCAGGGTCTTCACGAAGATCTG 11086099 >seq6 Length=51880498 Score = 131 bits (144), Expect = 4e-25 Identities = 155/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || |||||||| |||| ||||||||||| || || | |||||| Sbjct 47505270 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 47505211 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || | ||||||||| ||| || ||||| | || Sbjct 47505210 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTC-CTTACC 47505152 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | ||| || |||| ||||| ||| Sbjct 47505151 TGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTC 47505092 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 47505091 TTGCCGGTCAGGGTCTTCACGAAGATCTG 47505063 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||||||| || ||||| ||||| |||||||| || | ||||||||||| |||| Sbjct 32416401 CGGAGTCTCAGCACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGATGAAGTT 32416342 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||||||||| || || ||||| | | ||||| |||||| ||||||| Sbjct 32416341 TGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCT 32416282 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| | ||| || || || ||| | || || | | ||| | || | Sbjct 32416281 TCCTTATCCTGGGT-TTTGGCTTTTACATTTTCTATCGTATCCGAGGGCTCTTCCTCTAG 32416223 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || || || || || || Sbjct 32416222 GGTGATGGTCTTGCCCGTAAGGGTCTTTACGAAGATCTG 32416184 >seq42 Length=18384968 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || ||||| || |||| ||||||||| | || ||| | ||||| Sbjct 13800110 AGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCC 13800051 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| | ||| ||||||||||||||||||||||| || || || ||| Sbjct 13800050 TCCAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 13799991 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| ||||| |||||| | | || || || | ||||| ||| Sbjct 13799990 TGGATCTTGGTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTC 13799931 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || || || || || Sbjct 13799930 TTGCCCGTCAGGGTCTTTACGAAGATCTG 13799902 >seq17 Length=35549867 Score = 129 bits (142), Expect = 1e-24 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||||||||||||| ||||||||||| || || | |||||| Sbjct 30593103 AGGACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 30593044 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || | || |||||| ||| || ||||| ||| Sbjct 30593043 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTTCTGGTCGGGAGGGATGCCTTCCTTATCC 30592984 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGT-TTCTACATCCAACGTGATCGT 199596 || ||||| ||| || |||| |||||| | ||| || || |||| ||||| || Sbjct 30592983 TGGATCTTGGCCTTGACATTCTCGATGGTGTC-GCTGTGCTCAACCTCCAGGGTGATGGT 30592925 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| | || || || |||||||| || || Sbjct 30592924 CTTGCTGGTCAGGGTCTTCACAAAGATCTG 30592895 Score = 107 bits (118), Expect = 5e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 |||||||| || || || ||||| |||||||| || | ||||||||||| ||| | | Sbjct 25101816 AGTCTCAGCACCAGATGCAGAGTGGACTCCTTCTGAAGGTTGTAGTCAGATAAACTTCGG 25101875 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||||||||||||||| || || ||| | || | ||||| |||||| ||| ||||| Sbjct 25101876 CCATCTTCCAGCTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCCGGAGGAATGCCTTCC 25101935 Query 199532 CGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||| || ||| || || || ||| | || |||| | || | || | || Sbjct 25101936 TTTTCCTGGAT-TTTGGCTTTTACATGTTCTATCGTATCTGAGGGCTCAATCTCAAGGGT 25101994 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || ||||| || || || || || Sbjct 25101995 GATGGTCTTGCCTGTAAGAGTCTTGACGAAGATCTG 25102030 >seq76 Length=7797616 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||||||| |||| ||||||||||| || || | || || Sbjct 4980824 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTC 4980883 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| ||| || ||||| || Sbjct 4980884 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATC 4980943 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || |||| |||||| | | || || |||| ||||| || Sbjct 4980944 CTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 4981003 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| || || || Sbjct 4981004 CTTGCCAGTCAGGGTCTTCACGAAGATCTG 4981033 >seq40 Length=19049039 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || |||||||| |||| ||||||||||| || || | ||| Sbjct 15841330 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGTTGTCT 15841271 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || | ||||||||| ||| || ||||| ||| Sbjct 15841270 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCC 15841211 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || |||| ||||| ||| Sbjct 15841210 TGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 15841151 Query 199598 TTACCCGTGAGAGTTTTCACAAAAA 199622 || || || || || || ||||||| Sbjct 15841150 TTGCCGGTTAGGGTCTTGACAAAAA 15841126 >seq24 Length=26830293 Score = 114 bits (126), Expect = 3e-20 Identities = 152/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||||||| |||| ||||||||||| || || ||||| Sbjct 11934355 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGTGGCCATC 11934296 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || ||| || ||||| || Sbjct 11934295 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGTTCGGGAGGGATGCCTTCCTTATC 11934236 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || |||| || || | | || || |||| ||||| || Sbjct 11934235 CTGGATCTTGGCCTTGACATTCTCGA-TGTTTCATTGGGCTCCACCTCCAGGGTGATGGT 11934177 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 11934176 CTTGCCAGTCAGGGTCTTCACAAAGATCTG 11934147 Score = 98.7 bits (108), Expect = 2e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||||||| |||| ||||||||||| || || | ||||| Sbjct 11934128 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 11934069 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 |||||||||||| || || ||||| || | ||||||||| || Sbjct 11934068 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGG 11934027 >seq67 Length=9509266 Score = 113 bits (124), Expect = 1e-19 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 |||||||| || ||||| ||||| ||||||| || | |||||| |||| ||| | | Sbjct 6398373 AGTCTCAGCACCAGGTGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGATAAACTTCGG 6398314 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||||||||||||||| || || ||||| || | ||||| || ||| ||||||||| Sbjct 6398313 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCTGGAGGAATTCCTTCC 6398254 Query 199532 CGCTCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||| || ||| |||| || ||| | || || | | || || || | || Sbjct 6398253 TTATCCTGGAT-TTTGGCTTATACATTTTCTATTGTATCCGAGGGCTCAACCTCGAGGGT 6398195 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| ||||| || || || ||||| || || Sbjct 6398194 GATGGTCTTGCCCGTAAGGGTCTTGACAAAGATCTG 6398159 >seq65 Length=10584338 Score = 111 bits (122), Expect = 4e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||||||| || || || ||||| |||||||| || | ||||||||| | ||||| Sbjct 10481000 CGGAGTCTCAGCACCAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAAAGTT 10480941 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||| |||||||||||| || || ||||| || | ||||| ||| || ||||||| Sbjct 10480940 CGGCCATATTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCCAGAGGAATTCCT 10480881 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| | |||| || || ||| ||| | || || | | || || || | Sbjct 10480880 TCCTTATCCTGGA-CTTTGGCTTTTACGTTTTCTATCGTATCCGAGGGCTCAACCTCGAG 10480822 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAA 199620 ||||| ||||| || || || || || ||||| Sbjct 10480821 GGTGATGGTCTTGCCTGTAAGGGTCTTGACAAA 10480789 >seq26 Length=25362064 Score = 100 bits (110), Expect = 7e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||| ||| |||| ||||||||||| ||| || ||||| Sbjct 23898024 CAGGACCAGGTGCAGGGTGGACTTCTTCTGGATGTTGTAGTCAGACAAGGTGTGGCCATC 23897965 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 |||||||||||| ||||| ||||| || | ||||||||| ||| Sbjct 23897964 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGA 23897922 >seq58 Length=12492363 Score = 96.9 bits (106), Expect = 8e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| ||||| | || |||||||| |||| ||||||||||| || || Sbjct 9398034 CGCAGGCGCAGGACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 9398093 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| | ||| || || ||||| || | ||||||||| ||| || ||| Sbjct 9398094 CGGCCATCTTCCAGTTCCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCT 9398153 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || ||||| ||||| ||| || |||| |||||| Sbjct 9398154 TCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 9398194 >seq78 Length=8204013 Score = 91.5 bits (100), Expect = 3e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||||||||| | || ||| | ||||| ||||||||||| ||||| ||| Sbjct 1576089 CCTTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAG 1576148 Query 199499 ATGAGACGCTGCTGGTCCGG 199518 |||||||||||||||||||| Sbjct 1576149 ATGAGACGCTGCTGGTCCGG 1576168 >seq8 Length=54109746 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || || || |||||||| |||| ||||||||||| || || | |||||| Sbjct 40062431 AGGACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 40062372 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTG 199512 ||||||||||| || || ||||| || | |||||| Sbjct 40062371 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTG 40062337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178764191493207