Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq42 145 9e-30 seq76 141 1e-28 seq49 131 2e-25 seq6 131 2e-25 seq40 129 7e-25 seq17 127 2e-24 seq24 114 1e-20 seq26 87.8 2e-12 seq30 86.0 7e-12 seq58 84.2 2e-11 >seq42 Length=18384968 Score = 145 bits (160), Expect = 9e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| |||| || ||| || ||||| ||||||||||| |||||||| | || || Sbjct 13800108 CACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCCTC 13800049 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||| ||| || || | ||||||||||| | || | || |||||||||| Sbjct 13800048 CAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 13799989 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| |||||| | | | |||||||| | ||||| || | |||||||| || Sbjct 13799988 GATCTTGGTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTT 13799929 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||| || || || ||||| ||||| Sbjct 13799928 GCCCGTCAGGGTCTTTACGAAGATCTGCAT 13799899 >seq76 Length=7797616 Score = 141 bits (156), Expect = 1e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || |||||| ||||| |||||||| || || ||||| || Sbjct 4980822 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCG 4980881 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| | ||||||||||| || | || ||||| Sbjct 4980882 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTA 4980941 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | | |||||||| | ||||| |||| |||||| Sbjct 4980942 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 4981001 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || ||||| ||||| || || || ||||| |||||| Sbjct 4981002 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 4981037 >seq49 Length=14824766 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| || ||||||||||| || || Sbjct 11086287 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCTGCAAA 11086228 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||||| || | || || || ||| |||||| ||||| | Sbjct 11086227 GATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTGACATT 11086168 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||||| | |||||| |||| |||||||| ||||| ||||| || || || Sbjct 11086167 TTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 11086108 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 11086107 GAAGATCTGCAT 11086096 >seq6 Length=51880498 Score = 131 bits (144), Expect = 2e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||| | ||||| |||| || |||||| ||||| |||||||| || Sbjct 47505286 GCCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 47505227 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || ||||| | || || ||||||||||| || || |||| | ||||||||| | || Sbjct 47505226 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGG 47505167 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||| || |||||| ||||| || | | |||||||| | |||||| Sbjct 47505166 GATGCCTTCCTT-ACCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGTTCCAC 47505108 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| ||||| ||||| || || || ||||| ||||| ||| Sbjct 47505107 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATCTTG 47505056 >seq40 Length=19049039 Score = 129 bits (142), Expect = 7e-25 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 |||| | ||| || || | ||| | ||||| |||| || |||||| ||||| |||| Sbjct 15841353 ATTAATAGCCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGT 15841294 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 |||| || || ||||| | ||| || ||||||||||| || || |||| | |||||||| Sbjct 15841293 AGTCAGACAGGGTGCGGTTGTCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGT 15841234 Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCG 46538 ||| || | || ||||| ||| |||||| ||||| || | | |||||||| | Sbjct 15841233 CGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGG 15841174 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAA 46584 || || |||| |||||||| ||||| || || || || ||||| Sbjct 15841173 GCTCGACCTCCAGGGTGATGGTCTTGCCGGTTAGGGTCTTGACAAA 15841128 >seq17 Length=35549867 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||| | ||||| |||| || |||||||||||| |||||||| || Sbjct 30593119 GCCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 30593060 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || ||||| | || || ||||||||||| || || |||| | || |||||||| || Sbjct 30593059 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTTCTGGTCGGGAGG 30593000 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||| ||| |||||| ||||| || | | |||||||| || || Sbjct 30592999 GATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGTGCTCAAC 30592940 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| |||| ||||| || || |||||||| ||||| Sbjct 30592939 CTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCACAAAGATCTGCAT 30592892 >seq24 Length=26830293 Score = 114 bits (126), Expect = 1e-20 Identities = 155/215 (72%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || |||||| ||||| |||||||| || || ||| | | Sbjct 11934357 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGTGGCCA 11934298 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| | |||||| |||| || | || ||||| Sbjct 11934297 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGTTCGGGAGGGATGCCTTCCTTA 11934238 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | | || || | | ||||| |||| |||||| Sbjct 11934237 TCCTGGATCTTGGCCTTGACATTCTCGA-TGTTTCATTGGGCTCCACCTCCAGGGTGATG 11934179 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || |||||||| ||||| Sbjct 11934178 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 11934144 >seq26 Length=25362064 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || || |||| ||||| |||| || || ||| ||||| |||||||| || Sbjct 23898038 CCTCCCCTCAAGCGCAGGACCAGGTGCAGGGTGGACTTCTTCTGGATGTTGTAGTCAGAC 23897979 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| | | || || |||||||||||||| || |||| | ||||||||| | || Sbjct 23897978 AAGGTGTGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 23897919 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 || ||||| || |||| | ||||| || | | |||||||| | |||||| Sbjct 23897918 CTGCCTTCCTTATCTTGGATCATGGCCTTGACATTCTCGATGGTGTCGCTGGGTTCCACC 23897859 Query 46547 TCCACCGTGATGG 46559 |||| || |||| Sbjct 23897858 TCCAGGGTTATGG 23897846 >seq30 Length=25365230 Score = 86.0 bits (94), Expect = 7e-12 Identities = 124/173 (72%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 46429 AGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCAC 46488 |||||| || || || | ||||||| |||| || |||| ||||||||||| | || | Sbjct 16538405 AGTGCGGTCATCCTCCAACTGCTTGTCGGCAAAGATCAGACGCTGCTGGTCCGGGGGGAT 16538464 Query 46489 GCTCTCCTTGTCCATGATCTTCTTCTTG---AGCG-TCGCCACCGTGTCGCTCGATTCCA 46544 || ||| | |||| ||||||| |||| | || | | |||||||| | |||| Sbjct 16538465 GCCCTCTTCGTCCTGGATCTTCGCCTTGAAAAACGTTTTTGAAGGTGTCGCTGGGCTCCA 16538524 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | || | ||| ||||| ||||| ||||| || || | ||||| |||||| || Sbjct 16538525 CCTCAAGCGTAATGGTGTTGCCTGTCAGGGTCTTCATGAAGATCTGCATTGTG 16538577 >seq58 Length=12492363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| ||||| || |||||| ||||| |||||||| || || ||||| | Sbjct 9398040 CGCAGGACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 9398099 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || || | |||||| || || |||| | ||||||||||| || | || ||||| Sbjct 9398100 TCTTCCAGTTCCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTA 9398159 Query 46499 TCCATGATCTTCTTCTTGA 46517 ||| |||||| ||||| Sbjct 9398160 TCCTGGATCTTGGCCTTGA 9398178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565164770632920