Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq42 149 6e-31 seq76 123 2e-23 seq49 118 1e-21 seq40 116 4e-21 seq17 105 7e-18 seq6 102 8e-17 seq14 100 3e-16 seq24 96.9 3e-15 seq65 82.4 8e-11 >seq42 Length=18384968 Score = 149 bits (164), Expect = 6e-31 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || || |||||||| ||||||||| |||| || ||| ||| | Sbjct 13799899 ATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCCAGC 13799958 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | ||||| | |||| || |||| ||||| ||||| || ||| | |||| Sbjct 13799959 GACACCATCGAAAACG--TCAAGACCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACC 13800016 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | || |||| |||||||| || | ||||| || |||||||| Sbjct 13800017 AGCAGCGTCTCATCTTTGCCAGCAAGCAGCTGGAGGATGGTCGCACTCTGTCCGACTACA 13800076 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| || || | |||||||| ||||||| || || | || ||| Sbjct 13800077 ACATCCAGAAAGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGGGGTGGC 13800126 >seq76 Length=7797616 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 4981037 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 4980978 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | | || | || |||| || || || || || || ||||||| Sbjct 4980977 CGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCA 4980918 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| |||| |||||||| |||||||| Sbjct 4980917 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCTGACTACAA 4980858 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || ||||| |||| ||||| Sbjct 4980857 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCG 4980822 >seq49 Length=14824766 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| | Sbjct 11086096 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAGC 11086155 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| || ||||| || || || ||||||| Sbjct 11086156 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAG 11086215 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| |||| |||||||| ||||||||| Sbjct 11086216 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAAC 11086275 Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446 ||||| ||||| | || ||||| Sbjct 11086276 ATCCAGAAGGAGTCCACCCTGCA 11086298 >seq40 Length=19049039 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 || || || || || || ||||| ||||||||| | || |||||| ||| ||||| | | Sbjct 15841128 TTTGTCAAGACCCTAACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGCGACACCATC 15841187 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || | || |||| || || || || || || ||||||| ||| |||| Sbjct 15841188 GAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAGCAGAGGCTG 15841247 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| |||||||| ||| | |||||||| |||||||||||||| ||| Sbjct 15841248 ATCTTTGCAGGCAAGCAGCTGGAAGACAACCGCACCCTGTCTGACTACAACATCCAGAAG 15841307 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || | || ||||| |||| || ||| | || || ||| Sbjct 15841308 GAGTCCACCCTGCACCTGGTCCTCCGTCTTAGGGGTGGC 15841346 >seq17 Length=35549867 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || |||| ||||||||| | || || ||| || | Sbjct 30592892 ATGCAGATCTTTGTGAAGACCCTGACCAGCAAGACCATCACCCTGGAGGTTGAGCACAGC 30592951 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || || || || || || ||||||| Sbjct 30592952 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAG 30593011 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 30593012 AAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 30593071 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||| | || ||||| |||| || ||| | || || ||| Sbjct 30593072 ATCCAAAAGGAGTCCACCCTGCACCTGGTCCTCCGTCTTAGGGGTGGC 30593119 >seq6 Length=51880498 Score = 102 bits (112), Expect = 8e-17 Identities = 162/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || || ||||| ||||||||| | || || || || Sbjct 47505057 AAGATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAACCC 47505116 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | ||||| | | | | | || | || |||| | || || || || || | ||| Sbjct 47505117 AGCGACACCATCGAGAATGTCAAGGCCAAGATCCAGGT-AAGGAAGGCATCCCTCCTGAC 47505175 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||||| || | |||||||| |||||| Sbjct 47505176 CAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTAC 47505235 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | || ||||| |||| || ||| | || || ||| Sbjct 47505236 AACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGTCTTAGGGGTGGC 47505286 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || || |||||||| ||||||||| | || | ||| || | Sbjct 32416181 ATGCAGATCTTCGTAAAGACCCTTACGGGCAAGACCATCACCCTAGAGGAAGAGCCCTCG 32416240 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | |||| |||| || || || || |||||||| | || || Sbjct 32416241 GATACGATAGAAAATGTAAAAGCCAAAACCCAGGATAAGGAAGGAATTCCTCCGGATCAG 32416300 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC-GACTACAA 38422 || | | || | || ||||| |||||||| || | || | | ||| | |||||||| Sbjct 32416301 CAAAGATTGATCTTTGCTGGCAAGCAGCTGGAAGATG-GCCAAACTTCATCTGACTACAA 32416359 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||| || ||||| | || ||||| |||||||| Sbjct 32416360 CATTCAGAAGGAGTCCACTCTGCACCTGGTGCTG 32416393 >seq14 Length=40210847 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133285 TTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGG 133344 |||||||| || |||||||||||||||||||| || |||| |||||| |||||| | Sbjct 6353832 TTTTCGTTTACTATGCCGTCGCTGGCGGCGAAGAAAGCCAAGACGTGCGAGATGAAGTAC 6353773 Query 133345 CGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCT 133399 ||||| | ||| |||| | |||||||| | |||||||||||| ||||||| Sbjct 6353772 CGCTCCTCGTCCTTCAGGGCCTCCCAGTGCTGAATGTCCTTGGACAAATCCACCT 6353718 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 133394 CCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCG 133453 ||||||||||| | ||||| || ||||||||||| || |||||||| ||| ||||| Sbjct 6353623 CCACCTCCTCGGCCGTCCAGAAGGACGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGT 6353564 Query 133454 AATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || | ||||| || || || || || |||||||| || |||| |||||||||| Sbjct 6353563 GGTACTCGATGGGGAAGATGACGAAGCGCCGGGGGTTCTCCCGCAGCAGCGGCTCC 6353508 >seq24 Length=26830293 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 11934144 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAAT 11934203 Query 38304 GA--CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || || || | || | | || | || |||| || || || || || || |||| | Sbjct 11934204 GAAACATCGAG--AATG-TCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGAAC 11934260 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| || | || ||||| |||||||| || | | |||||| ||||||| Sbjct 11934261 AGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCACACCCTGTCTGACTACA 11934320 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 ||||||| ||||| | || ||||| |||| ||||| |||| Sbjct 11934321 ACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAG 11934363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 ||||||| ||| |||| || | || ||||| |||||||| || | |||||||| | Sbjct 11934028 CCGACCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTG 11934087 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||||| ||||| | || ||||| |||| ||||| |||| || ||| Sbjct 11934088 ACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGGGGTGGC 11934143 >seq65 Length=10584338 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| | || || || || || || ||||| ||||||||| |||| || ||| || Sbjct 10480777 AAGATGCAGGTCTTTGTCAAGACCCTTACAGGCAAGACCATCACCCTCGAGGTTGAGCCC 10480836 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | | ||||| | |||| ||| ||| || || || |||||||| || Sbjct 10480837 TCGGATACGATAGAAAACG-TAAAAGCCAAAGTCCAGGATAAGGAAGGAATTCCTCTGGA 10480895 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || || | || || | || ||||| |||||||| | | || || | ||||| Sbjct 10480896 TCAGCAAAGACTGATCTTTGCTGGCAAGCAGCTGGAATATGGCCGAACTTTATCGGACTA 10480955 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||||| || ||||| | || |||||| |||||||| Sbjct 10480956 CAACATTCAGAAGGAGTCTACTCTGCATCTGGTGCTG 10480992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500107646240640