Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3 100 1e-15 seq67 93.3 2e-13 seq63 91.5 6e-13 >seq3 Length=63406555 Score = 100 bits (110), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAAGGA 96108 |||||| | |||||||||||| || || || ||||| |||| || ||| ||| Sbjct 55929918 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCAGTGAACAAAT-------GGA 55929970 Query 96109 TAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAACA 96168 |||||| |||||| ||| |||| || || ||| | | ||| |||||| | ||| Sbjct 55929971 TAAAAGAACTTTAGAAATATTTAGAGCAGGAGGCCACTGTGATCTTAGAATATCGAGACA 55930030 Query 96169 AATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTAGG 96228 ||| || || | ||||||||||||||||||| ||| ||||| || ||||| Sbjct 55930031 AATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACTTTAGC 55930090 Query 96229 AGGCTTATATGGATAGTCTTCAGGAAAAGTAATT 96262 || || | ||||||||| ||||||| |||| Sbjct 55930091 TGGTTTGCAGGGATAGTCTGTAGGAAAATGAATT 55930124 Score = 95.1 bits (104), Expect = 5e-14 Identities = 335/510 (66%), Gaps = 24/510 (5%) Strand=Plus/Plus Query 451981 TAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCT 452040 ||||||| | ||||||||||| |||| || ||||||| || || || ||||| || || Sbjct 58827111 TAAGAGCATCAATCCTGATGAGACTGTGGCTTATGGTGTAGCTGTGCAGGCAGCCATCCT 58827170 Query 452041 AACAGGTTCAGATGA---TGAAAAATT--AGGAGATATT-CTGTTAGTAGATGTAACACC 452094 | || ||| | ||| || | |||| | || ||||| | |||| || || Sbjct 58827171 GTCTGG---AGACAAGTCTGAGAACGTTCAGGATCTGTTGCTGTTGG---ATGTCACTCC 58827224 Query 452095 TCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAAC 452154 | | || ||||| |||| || |||| |||| | ||||| | | || || | || Sbjct 58827225 TTTCTCCCTTGGCATTGAGACTGCTGATGGAGTCATGACCATGCTCATCAAGCACAACAC 58827284 Query 452155 TTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGT--GATAACCAACCAGGT 452212 | ||||| || ||| || || | || | | | || ||||| || ||| Sbjct 58827285 CACAATTCCCACCAAGCAGATGTTGACCTTCACCAC--CTACTCAGACAACCAGCCTGGT 58827342 Query 452213 GTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGA 452272 || ||||| || | |||||| || | ||| ||||| ||||| ||| || || Sbjct 58827343 GTGCTCATTCAGGTTTATGAAGGTGAGCATGCTATGACCAAGGATAACAATCTGCTTGGC 58827402 Query 452273 GAATTTACTCTTTCAAACATTCCTCCTATG--CCAAGGGGAACTCCTCAAATTGAAATTA 452330 | ||| || | | ||| || |||||| ||| || | |||||| |||||| | | Sbjct 58827403 AAGTTTGAACTCACCACCATACCACCTATGACCCATGGCGT--TCCTCAGATTGAAGTCA 58827460 Query 452331 CCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAA-ATCATCTGGA 452389 ||| |||| ||||||| | | || |||| | ||| || ||||| | || |||| Sbjct 58827461 CCTTTGATATTGATGCCAGCAGCATCCTTAGCATCTCTGCTGTGGAAAAGAGCA-CTGGG 58827519 Query 452390 AAATCAGAAAAA-ATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGA 452448 ||| |||| || || || || |||||||| || || ||| | || ||||||||||| Sbjct 58827520 AAAG-AGAACAAGATCACCATCACTAATGACAAGGGCCATTTGTGCAAGGAAGATATTGA 58827578 Query 452449 AAAAATGGTAGATGAAGCAGAAAAATTCAA 452478 | ||||| | ||||| ||||| | ||| Sbjct 58827579 GCAGATGGTCCAAGAAGCTGAAAAGTGCAA 58827608 Score = 91.5 bits (100), Expect = 6e-13 Identities = 228/344 (66%), Gaps = 3/344 (1%) Strand=Plus/Plus Query 451262 ATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGAT 451321 |||||||| | |||||||| || | |||||| || |||| | |||| | Sbjct 58826402 ATGGTTCTGTCCAAAATGAAGGAGATCGCAGAAGCCTACCTTGGCAAGACTCTTACCAAC 58826461 Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || | || || || | || |||||||| | || || || || || ||||| || Sbjct 58826462 GCTGTGGTCACAGTGTCCACCTACTTCAATGACTCTCAGCGTCAGGCCACCAAAGACGCT 58826521 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 ||| ||||||||| ||||||||||| | || || ||||| || || || |||||| | Sbjct 58826522 GGAACCATTGCTGGTCTAAATGTTCTTTGGATCATCAATGAGCCAACTGCTGCTGCTATT 58826581 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || ||||| || ||| || || | | ||||||||| | | | ||||| | Sbjct 58826582 GCTTATGGCCT-GGACAA--GAAGGTTGAGGCTGAAAAAAATGTGGTGATTTTTGACCTG 58826638 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 || || || || ||| ||| | || || |||||||||| ||||| || ||| Sbjct 58826639 GGAGGTGGCACGTTCGATGTGTCTATCCTCACAGTTGAAGATGGAACCTTTGAGGTCAAG 58826698 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | | ||| || || ||| |||| || ||||| |||| || Sbjct 58826699 TCCGCAGCTGGAGACACCCATTTAGGTGGAGAAGACTTTGACAA 58826742 >seq67 Length=9509266 Score = 93.3 bits (102), Expect = 2e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || || || || || || || || ||||| | || Sbjct 6398156 ATGCAGATCTTTGTCAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTTGAGCCCTCG 6398215 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || ||||| || |||||||||||||||||||| ||||| Sbjct 6398216 GATACAATAGAAAATGTATAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCAGATCAG 6398275 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || || || |||||||| ||| ||| | ||||| || Sbjct 6398276 CAAAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAAGTTTATCTGATTACAAC 6398335 Query 391230 ATTGATAAGGA-TGCAACACTTCACTTAGTATTAAGACTG 391268 ||| | ||||| ||| || || ||| | || | |||||| Sbjct 6398336 ATTCAGAAGGAGTGC-ACTCTGCACCTGGTGCTGAGACTG 6398374 >seq63 Length=10623516 Score = 91.5 bits (100), Expect = 6e-13 Identities = 86/108 (80%), Gaps = 4/108 (4%) Strand=Plus/Plus Query 451189 AAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTG---AAACTAAAACTTTTGCTCC 451245 |||| |||| || || |||||||| || | ||||| |||| ||||| |||||||| Sbjct 8044283 AAAACGAAA-CCATACATTCAAGTGGATATTGGAGGTGGGCAAACAAAAACATTTGCTCC 8044341 Query 451246 TGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 |||||| ||||| | |||||||| ||||||||||||||||| || || Sbjct 8044342 TGAAGAGATTTCTGCCATGGTTCTCACTAAAATGAAAGAAACTGCTGA 8044389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975454603931468